通过Thioester将糖转化为酸:一个计算研究
Jeremy Kua1, Jonathan D Karin1
1Department of Chemistry & Biochemistry, University of San Diego, San Diego, CA 92110, USA.
Life (Basel, Switzerland)
|August 28, 2025
概括
糖可以通过醇-化反应在没有酶的情况下转化为碳酸. 虽然热力学上有利,但反应速率受到水或硫化消除的限制,这表明α二碳酸是更有效的催化剂.
科学领域:
- 生物化学
- 天体化学
- 有机化学
背景情况:
- 像TCA循环这样的核心代谢循环依赖于碳酸和.
- 甲反应产生了糖,这是前生物化学的潜在前体.
- 通常需要酶途径进行代谢转化.
研究的目的:
- 研究糖的非酶转化为碳酸.
- 评估预微生物代谢途径的热力学和动力学.
- 确定早期生命化学的有利反应机制和中间体.
主要方法:
- 反应路径的热力学计算.
- 动力分析以确定速度限制的步骤.
- 添加硫和硫形成/水解的建模.
主要成果:
- 通过一种非酶途径,通过酸中间体将糖转化为碳酸.
- 反应机制在热力学上是有利的.
- 发现了动力瓶,特别是在脱水阶段 (H2O或H2S消除).
- 阿尔法二碳化合物显示出更大的可行性,因为它们绕过了限制速度的消除步骤.
结论:
- 在益生菌条件下,从糖中合成碳酸的非酶性合成是合理的.
- 这种转换的关键是 thioester 中间体.
- 反应动力学,特别是脱水步骤,带来了挑战,有利于替代反应物如α二碳酸进行有效的催化.
相关概念视频
Carboxylic Acids to Esters: Acid-Catalyzed (Fischer) Esterification Mechanism
8.2K
Carboxylic acids react with alcohols to yield esters via an acid-catalyzed condensation reaction called Fischer esterification. This is a nucleophilic acyl substitution reaction that proceeds via a tetrahedral intermediate, where a water molecule is eliminated as the leaving group.
8.2K
Esters to Carboxylic Acids: Acid-Catalyzed Hydrolysis
3.1K
Hydrolysis of esters under acidic conditions proceeds through a nucleophilic acyl substitution. In the presence of excess water, the reaction proceeds in a reversible manner, forming carboxylic acids and alcohols.
During hydrolysis, the ester is first activated towards nucleophilic attack through the protonation of the carboxyl oxygen atom by the acid catalyst. The protonation makes the ester carbonyl carbon more electrophilic. In the next step, water acts as a nucleophile and adds to the...
During hydrolysis, the ester is first activated towards nucleophilic attack through the protonation of the carboxyl oxygen atom by the acid catalyst. The protonation makes the ester carbonyl carbon more electrophilic. In the next step, water acts as a nucleophile and adds to the...
3.1K
Esters to β-Ketoesters: Claisen Condensation Mechanism
3.8K
Regular Claisen condensation involves the synthesis of β-ketoesters by combining identical ester molecules bearing two α hydrogens in the presence of an alkoxide base. The reaction commences with the deprotonation of the acidic α hydrogen by the base to form a resonance stabilized ester enolate. This nucleophilic ion then attacks the carbonyl center of another ester molecule to generate a tetrahedral alkoxide intermediate. Next, the expulsion of the alkoxide group from the...
3.8K
Preparation and Reactions of Thiols
6.7K
Thiols are prepared using the hydrosulfide anion as a nucleophile in a nucleophilic substitution reaction with alkyl halides. For instance, bromobutane reacts with sodium hydrosulfide to give butanethiol.
6.7K
Carboxylic Acids to Esters: Acid-Catalyzed (Fischer) Esterification Overview
18.5K
The Fischer esterification reaction was developed by the German chemist Emil Fischer in 1895. It is a condensation reaction between carboxylic acids and alcohols in an acidic medium to give esters and water.
18.5K
Acid Halides to Esters: Alcoholysis
3.1K
Alcoholysis is a nucleophilic acyl substitution reaction in which an alcohol functions as a nucleophile. Acid halides react with alcohol to produce esters. The mechanism proceeds in three steps:
3.1K


