重组剂是最近PRRSV-2演变的关键驱动因素
Clarissa Pellegrini Ferreira1, Lucina Galina-Pantoja2, Mark Wagner3
1Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, 1365, Gortner Ave, Falcon Heights, MN 55108, USA.
Pathogens (Basel, Switzerland)
|August 28, 2025
概括
全基因组测序显示重组显著影响美国的猪生殖和呼吸系统综合征病毒2型 (PRRSV-2) 进化.仅依靠ORF5测序可以错误分类PRRSV-2菌株,强调需要在监测中进行全基因组分析.
科学领域:
- 兽医病毒学
- 分子流行病学
- 猪病研究
背景情况:
- 猪生殖和呼吸系统综合征病毒 (PRRSV) 是全球猪生产的主要经济威胁.
- 在美国,PRRSV-2 是主要的变种,传统上使用ORF5基因测序进行分类.
- ORF5测序可能无法检测PRRSV-2中的重组等关键进化机制.
研究的目的:
- 调查复合在美国PRRSV-2分离物的演变中的作用.
- 根据全基因组测序与ORF5测序进行基因组分类比较.
- 评估基于ORF5的PRRSV-2血统分配的局限性.
主要方法:
- 七个美国PRRSV-2分离物的全基因组测序 (2006-2024年).
- 使用参考导向组件进行基因组学分析.
- 使用RDP5和SIMplot软件进行重组检测.
主要成果:
- 在7个PRRSV-2分离物中,有4个呈现出整个基因组和ORF5序列之间不一致的基因分布.
- 这些异常归因于多重重组合事件,特别是ORF2-ORF7.
- 三个分离物体表现出基因一致性,没有显著的重组证据.
结论:
- 重组是PRRSV-2进化的重要驱动因素,影响病毒多样性.
- 基于ORF5的血统分类不足以准确地描述PRRSV-2菌株.
- 全基因组测序和监测对于精确的病毒追踪和有效的控制策略至关重要.
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