基于机器学习的半自动化框架,用于使用ilastik细分和斐济核计数来量化酵母化效率
Xuan Shang1, Zhenwei Yang2, Guanzu Peng3
1State Key Laboratory of Cognitive Neuroscience and Learning and Beijing Key Laboratory of Genetic Engineering Drugs & Biotechnology, College of Life Sciences, Beijing Normal University, Beijing 100875, PR China; Key Laboratory of Cellular Physiology, Ministry of Education, Shanxi Medical University, Taiyuan 030001, PR China; Department of Physiology, Shanxi Medical University, Taiyuan 030001, PR China.
Fungal genetics and biology : FG & B
|August 28, 2025
概括
这项研究提出了一种新的自动化方法来量化酵母化效率,在保持高精度的同时,将手动计数时间缩短68%. 该管道可靠地对各种酵母菌株和遗传背景进行分类.
科学领域:
- * 微生物学与遗传学
- * 生物图像分析
背景情况:
- *对于遗传学研究来说,准确量化酵母胞效率至关重要.
- * 手动计数是劳动密集型的,容易产生主观错误.
- * 现有的深度学习工具可能不适用于所有人或无法适应.
研究的目的:
- * 开发一个自动化的,强大的,可访问的酵母化效率量化管道.
- * 减少与手动计数相关的处理时间和主观偏差.
- * 为各种遗传背景和子形态提供可靠的替代品.
主要方法:
- 使用ilastik来优化纹理特征以细分分泌酵母细胞.
- * 用于在细分细胞内优化图像处理和子量化.
- * 通过手动质量控制点实现二,三和四的自动分类.
主要成果:
- * 在手动计数时达到了93.4%的一致性 (ICC=0.94).
- * 处理时间缩短了68% (P < 0. 001).
- * 在Hsp82酸化突变和多种遗传背景中表现一致.
结论:
- * 开发的管道提供了可重复和精确的替代手工酵母化量化方法.
- *模块化设计允许可调节的参数和与各种成像数据集和标记器的兼容性.
- * 这种方法平衡了吞吐量和精度,使其适用于标准实验室显微镜.
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