哺乳动物内生G-四重体的保存揭示了它们与复杂特征的关联
Ze-Hao Zhang1, Zi-Yan Wang2, Cong-Hui Li3
1Hubei Hongshan Laboratory, Hubei Key Laboratory of Metabolic Abnormalities and Vascular Aging, Hubei Key Laboratory of Agricultural Bioinformatics, College of Life Science and Technology, College of Biomedicine and Health, Interdisciplinary Sciences Institute, Huazhong Agricultural University, Wuhan, 430070, PR China.
Genome biology
|September 2, 2025
概括
在人类中,高度保存的DNAG四重复体 (G4s) 对于基因调节至关重要,并且与复杂的特征相关. 这些通过进化概况识别的结构显示了哺乳动物的显著调节潜力和功能重要性.
科学领域:
- 基因组学
- 表观遗传学
- 生物信息学
背景情况:
- 基因四重复 (G4s) 是具有基因表达调节作用的四链结构.
- 内生G4s (eG4s) 是人类基因组的关键,但它们的进化保护是不太了解的.
- 进化保护分析对于识别功能调节元素至关重要.
研究的目的:
- 构建人类eG4的哺乳动物进化概况.
- 识别和描述高度保存的eG4.
- 研究保存的eG4s的监管潜力和生物学意义.
主要方法:
- 来自EndoQuad数据库和G4 CUT&Tag实验的综合数据.
- 使用基于语言模型的大型工具eG4finder进行eG4预测和结构验证.
- 在哺乳动物基因组中分析了进化保护.
主要成果:
- 在哺乳动物约束下确定了92,910个高度保存的人类eG4.
- 发现可转移的元素有助于灵长类特异性EG4.
- 高度保存的eG4显示出增强的调节潜力,活性和转录因子亲和力,作为强大的转录激活剂.
- 丰富发育和衰老路径,与特征相关变异和严重遗传疾病有显著的关联.
结论:
- 在哺乳动物中保存的人类eG4s起着关键的调节作用.
- 这些保存的eG4与复杂的人类特征和生物过程密切相关.
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