具有单个催化残留的两个LARA类核酸辅因子利用酶的结构
bioRxiv : the preprint server for biology
|September 2, 2025
概括
拉拉酶使用钉核酸 (NPN) 辅因子进行α-酸催化. 一些缺乏胺残留的变体显示出新的结构和基质处理机制,可能扩大其代谢作用.
科学领域:
- 生物化学
- 结构生物学
- 酵素学
背景情况:
- 尼克尔核酸 (NPN) 辅因子对于由LarA家族酶催化的α-酸种族化/表皮化至关重要.
- 一个已知的机制涉及两个具有催化作用的胺残留物作为一般的酸和.
- 一些LarA同类物 (LarAHs) 含有阿斯巴拉基尼尔残留物而不是希斯蒂丁,阻止了正规的酸催化.
研究的目的:
- 研究缺乏关键活性位点胺的LARAHs催化物的结构和机制基础.
- 阐明NPN辅因子在这些变异性酶中的作用.
- 探索这些不同的LARAH的潜在代谢功能.
主要方法:
- 使用冷电子显微镜 (cryo-EM) 来确定两个LARAH的结构.
- 使用NPN辅因子和不使用NPN辅因子解决结构.
- 进行基因组上下文分析以推断功能作用.
主要成果:
- 观察到一个一致的八度组合,这是LarA家族前所未有的.
- 发现了新的活性部位残留物,表明了替代基质识别和处理机制.
- 基因组分析表明它可能在碳水化合物代谢中起作用.
结论:
- 这项研究揭示了希斯蒂丁缺乏LARAH的新型结构组合和催化策略.
- 这些发现扩大了LarA酶家族内已知的机制多样性.
- 这些结果为探索涉及这些酶的新酶反应和代谢途径提供了基础.
更多相关视频
05:33Author Spotlight: Characterizing Novel Enzymes from Extremophiles and Common Pathogens to Understand DNA Repair and Replication
Published on: July 5, 2024
789
09:17Quantification of Bacterial Histidine Kinase Autophosphorylation Using a Nitrocellulose Binding Assay
Published on: January 11, 2017
8.6K
相关概念视频
ATP Synthase: Structure
13.0K
ATP synthase or ATPase is among the most conserved proteins found in bacteria, mammals, and plants. This enzyme can catalyze a forward reaction in response to the electrochemical gradient, producing ATP from ADP and inorganic phosphate. ATP synthase can also work in a reverse direction by hydrolyzing ATP and generating an electrochemical gradient. Different forms of ATP synthases have evolved special features to meet the specific demands of the cell. Based on their specific feature, ATP...
13.0K
Ligand Binding and Linkage
4.9K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.9K
Allosteric Proteins-ATCase
5.9K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
5.9K
The Nucleosome Core Particle
12.5K
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
12.5K
Cofactors and Coenzymes
83.5K
Enzymes require additional components for proper function. There are two such classes of molecules: cofactors and coenzymes. Cofactors are metallic ions and coenzymes are non-protein organic molecules. Both of these types of helper molecule can be tightly bound to the enzyme or bound only when the substrate binds.
83.5K
Metal-Ligand Bonds
21.5K
The hemoglobin in the blood, the chlorophyll in green plants, vitamin B-12, and the catalyst used in the manufacture of polyethylene all contain coordination compounds. Ions of the metals, especially the transition metals, are likely to form complexes.
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
21.5K
