ARCADE:通过激活工程从基础模型进行可控的Codon设计
Jiayi Li1, Litian Liang1, Shiyi Du1
1Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, 15217, US.
bioRxiv : the preprint server for biology
|September 2, 2025
概括
通过使用激活工程和预训练的基因组模型,ARCADE可以灵活地控制mRNA编码序列设计. 这种方法增强了可编程生物序列设计,用于mRNA疫苗和基因编辑疗法等应用.
科学领域:
- 生物信息学
- 计算生物学
- 合成生物学
背景情况:
- 编码序列设计对于mRNA治疗和基因编辑至关重要.
- 目前的方法缺乏实现各种设计目标所需的灵活性和控制能力.
研究的目的:
- 推出ARCADE,一个灵活可控的编码序列生成的新框架.
- 将激活工程扩展到连续的生物指标,以增强序列设计.
主要方法:
- ARCADE使用预训练的基因组基础模型进行激活工程.
- 它在模型的激活空间中使用具有生物意义的语义方向向量.
- 该框架可以调整连续性质,如代适应指数,最小自由能量和GC含量,而无需重新训练.
主要成果:
- 与现有方法相比,ARCADE表现出更高的性能和更大的灵活性.
- 这种方法可以精确控制多个连续的生物指标.
结论:
- 它代表了可编程生物序列设计的重大进展.
- 该框架有可能加速新型mRNA疫苗和基因编辑疗法的开发.
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