1997-2024年蛋白质学机器学习的进展和趋势:一个文献分析
Chao Tan1, Hao Liu1, Zhen Zhang1
1Clinical Medical College & Affiliated Hospital & College of Basic Medicine, Chengdu University, Chengdu, China.
Frontiers in medicine
|September 3, 2025
概括
这种图书统计分析绘制了蛋白质学中的机器学习 (ML),揭示了指数式增长和深度学习等关键趋势. 未来的工作应优先考虑可解释的模型和准确医学的跨学科合作.
科学领域:
- 蛋白质组学和生物信息学
- 计算生物学
- 在生命科学中的数据科学
背景情况:
- 在蛋白质学中对机器学习 (ML) 应用的兴趣日益增长.
- 缺乏基于机器学习的蛋白质组学研究领域的系统映射.
- 需要了解这一领域的知识结构,发展轨迹和新兴趋势.
研究的目的:
- 在机器学习驱动的蛋白质学上进行第一个大规模的文献分析.
- 阐明知识结构,发展轨迹和新兴研究趋势.
- 确定关键的研究重点,有影响力的贡献者和合作模式.
主要方法:
- 来自Web of Science核心集合的5156个出版物的图书统计分析 (1997-2024年).
- 使用CiteSpace,VOSviewer,Scimago Graphica和R bibliometrix包进行数据提取和可视化.
- 分析了关键词的共同出现,引用网络,主要期刊,作者和机构合作.
主要成果:
- 自2010年以来的指数式出版增长,在2019-2020年间大幅增加.
- 美国是最具生产力的国家,
- 深度学习,特别是AlphaFold2,推动了大量的引用;关键主题包括蛋白质-蛋白质相互作用预测和多组学分析.
- 在计算机科学,分子生物学和临床研究方面有强大的跨学科融合.
结论:
- 介绍了机器学习在蛋白质学中的第一个全面的文献统计概述.
- 突出了主要主题:深度学习,预训练模型和多经济体融合.
- 建议专注于可解释的模型,加强协作和标准化数据使用,以推进精准医学.
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