Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Point and Frameshift Mutations01:30

Point and Frameshift Mutations

78
Point mutations are genetic alterations involving the change of a single nucleotide base pair in DNA. Depending on how the alteration affects protein synthesis, they can lead to various consequences.Point mutations fall into the following types:Silent mutations occur when a nucleotide change does not alter the amino acid sequence due to the redundancy of the genetic code. For instance, changing ACC to ACA still encodes threonine, leaving the protein function unaffected. This occurs because...
78
Spontaneous and Induced Mutations01:30

Spontaneous and Induced Mutations

140
Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
140
In-vitro Mutagenesis01:16

In-vitro Mutagenesis

14.2K
To learn more about the function of a gene, researchers can observe what happens when the gene is inactivated or “knocked out,” by creating genetically engineered knockout animals. Knockout mice have been particularly useful as models for human diseases such as cancer, Parkinson’s disease, and diabetes.
14.2K
Mutation, Gene Flow, and Genetic Drift01:09

Mutation, Gene Flow, and Genetic Drift

59.4K
In a population that is not at Hardy-Weinberg equilibrium, the frequency of alleles changes over time. Therefore, any deviations from the five conditions of Hardy-Weinberg equilibrium can alter the genetic variation of a given population. Conditions that change the genetic variability of a population include mutations, natural selection, non-random mating, gene flow, and genetic drift (small population size).
59.4K
Mismatch Repair01:20

Mismatch Repair

5.2K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
5.2K
Mutations in Microorganisms01:18

Mutations in Microorganisms

74
Mutations are heritable changes in an organism’s genome involving alterations in the base sequence of DNA or RNA. These changes can influence cellular processes and phenotypic traits, potentially transforming the unaltered wild type into a mutant form. Such changes, termed forward mutations, are pivotal in shaping the genetic diversity of organisms.RNA viruses exhibit the highest mutation rates due to the absence of robust proofreading mechanisms during genome replication. In contrast,...
74

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Genetic analysis of imaging-derived phenotypes.

Nature reviews. Genetics·2026
Same author

An interpretable machine learning framework for dog breed inference and ancestry decomposition.

bioRxiv : the preprint server for biology·2026
Same author

Blood biomarkers and breed genetics of aging in pet dogs.

bioRxiv : the preprint server for biology·2026
Same author

Disordered but Different: Functional and Evolutionary Divergence of Transcription Factor Intrinsically Disordered Regions.

bioRxiv : the preprint server for biology·2026
Same author

Introgressed mitochondrial fragments from archaic hominins alter nuclear genome function in modern humans.

Science advances·2026
Same author

CYClones: A highly powered, fully genotyped, 8-parent yeast mapping population.

bioRxiv : the preprint server for biology·2025

相关实验视频

Updated: Sep 9, 2025

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
09:01

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli

Published on: March 16, 2011

30.7K

突变代谢:模拟代码级突变偏差和计算dN/dS的框架

Cooper Koers, Rob Bierman, Huixin Xu

    bioRxiv : the preprint server for biology
    |September 5, 2025
    PubMed
    概括

    突变代谢Forge模拟了密码子突变代谢,以计算非同义 (dN) 与同义 (dS) 的替代比率. 这种工具通过提供一个灵活的平台来测试蛋白质编码基因中的分子进化假设来帮助进化分析.

    科学领域:

    • 分子进化
    • 计算生物学
    • 生物信息学

    背景情况:

    • 非同义词与同义词的替代比率 (dN/dS) 对于理解分子进化和塑造蛋白质分歧的力量至关重要.
    • 由于序列上下文和替代模型的选择,解释dN/dS比可能是复杂的.

    研究的目的:

    • 推出一种新型工具,用于模拟级突变并计算dN/dS比.
    • 为测试进化假设和生成dN/dS的零分布提供一个灵活的平台.

    主要方法:

    • MutagenesisForge是一个模块化命令行工具和Python包.
    • 它具有支持特定替换矩阵的 MutationModel 接口.
    • 为dN/dS计算提供详尽和上下文模拟模式.

    主要成果:

    • 能够在用户定义的条件下模拟级突变发生.
    • 通过各种进化模型,便于统一计算dN/dS比率.
    • 为分析蛋白质编码基因的突变过程提供灵活的框架.

    结论:

    • 突变基因对蛋白质编码基因的进化分析提供了一个强大的解决方案.

    更多相关视频

    Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
    08:46

    Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms

    Published on: December 9, 2015

    10.7K
    Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis
    09:04

    Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis

    Published on: July 26, 2018

    7.9K

    相关实验视频

    Last Updated: Sep 9, 2025

    Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
    09:01

    Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli

    Published on: March 16, 2011

    30.7K
    Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
    08:46

    Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms

    Published on: December 9, 2015

    10.7K
    Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis
    09:04

    Studying Ribonucleotide Incorporation: Strand-specific Detection of Ribonucleotides in the Yeast Genome and Measuring Ribonucleotide-induced Mutagenesis

    Published on: July 26, 2018

    7.9K
  • 它通过允许用户指定的模拟条件来解决dN/dS解释方面的挑战.
  • 在大规模测序数据时代,该工具支持对突变过程的假设测试.