将单细胞基因组和转录组结合起来来解码乳腺癌的进展
Kaile Wang1, Rui Ye2, Shanshan Bai3
1Department of Systems Biology, UT MD Anderson Cancer Center, Houston, TX 77030, USA; State Key Laboratory of RNA Innovation, Science and Engineering, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
一种名为wellDR-seq的新方法分析成千上万个单细胞, 这项技术揭示了单细胞中复杂的基因型-表型关系, 以更好地了解癌症.
科学领域:
- 癌症学
- 基因组学
- 分子生物学
背景情况:
- 了解乳腺癌的进展需要同时分析单细胞基因组和转录组.
- 目前的方法缺乏像乳腺癌这样的复杂疾病的单细胞层面的基因型和表型的分辨率.
研究的目的:
- 开发和验证一种高通量,高分辨率的方法,用于同时进行单细胞基因组和转录组分析.
- 研究雌激素受体阳性乳腺癌的原始细胞和基因型-表型关系.
主要方法:
- 开发 wellDR-seq,一种用于数千个单细胞的同时基因组和转录组分析的新方法.
- 在12名雌激素受体阳性乳腺癌患者的33646个单细胞中应用wellDR-seq.
主要成果:
- 鉴定具有光线激素反应系的祖先亚克隆, 表明多个患者的潜在细胞来源.
- 分克隆级基因剂量关系的表征,显示大染色体段和单基因变异的近线性相关性.
- 发现剂量敏感和剂量不敏感的基因,包括已知的乳腺癌基因和非癌细胞中的零星拷贝数异常.
结论:
- 在乳腺癌中提供了前所未有的单细胞基因组学和转录学见解.
- 这些发现阐明复杂的拷贝数-基因表达关系,进一步了解乳腺癌的进展和潜在的起源.
更多相关视频
07:41Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
11:47Time-lapse Imaging of Primary Preneoplastic Mammary Epithelial Cells Derived from Genetically Engineered Mouse Models of Breast Cancer
Published on: February 8, 2013
相关概念视频
Tumor Progression
Colon cancer is one of the best-documented examples of tumor progression. Early mutation in the APC gene in colon cells causes a small growth on the colon wall called a polyp. With time, this polyp grows into a benign, pre-cancerous tumor. Further...
Cancers Originate from Somatic Mutations in a Single Cell
Cancer-Critical Genes II: Tumor Suppressor Genes
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
Adaptive Mechanisms in Cancer Cells
Some of the advantages that cancer cells have on normal cells include - enhanced ability to divide without terminally differentiating, induce new blood vessel formation,...
mTOR Signaling and Cancer Progression
The mTOR pathway or the...
