亚酶在30亿年前的结构演变.
Bruno Cuevas Zuviría1,2, Franka Detemple3, Kaustubh Amritkar1
1Department of Bacteriology, University of Wisconsin-Madison, Madison, United States.
eLife
|September 11, 2025
概括
研究人员复活了古老的化酶,以研究它们的进化. 这揭示了微妙的变化和适应如何允许酶在数十亿年内持续存在和演变,适应环境变化.
科学领域:
- 生物化学 生物化学
- 进化生物学 进化生物学
- 结构生物学 结构生物学
背景情况:
- 唯一已知的二降解机制是古老的,来自酶祖先的保存.
- 之前的研究已经在Azotobacter vinelandii*中复活了合成的祖先基酶.
研究的目的:
- 为了研究数十亿年来酶的结构演变.
- 将遗传学,祖先序列重建,蛋白质结晶学和深度学习预测结合起来.
- 了解酶是如何适应重大环境转型的.
主要方法:
- 使用遗传学和祖先序列重建的古分子方法.
- 蛋白质结晶学以确定结构.
- 基于深度学习的预测.
- 合成祖先基酶的复活和基因组集成.
主要成果:
- 基酶在其整个进化过程中都保持了保存的多重核.
- 新型模块化特征在酶中演变,与环境转变相关.
- 微妙的远端变化和暂时的调节适应对于酶持久性至关重要.
- 蛋白质进化是由地质时间的环境压力塑造的.
结论:
- 基酶的进化特点是保持核心和可适应的模块化特征.
- 环境转变推动了酶结构和功能的演变.
- 建立的框架有助于识别古代蛋白质的结构约束.
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