3D染色体架构和基因表达动态的时空协调在绵羊胚胎肌体发生过程中
Xiaobo Li1, Yingxiao Su1, Qian Chen1
1Institute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing, 100193, China.
International journal of biological macromolecules
|September 15, 2025
概括
这项研究揭示了在绵羊骨肌肉发育过程中的动态三维 (3D) 基因组结构变化. 这些3D基因组改变与基因表达有关,影响肌肉纤维类型和质量.
科学领域:
- 基因组学就是基因组学.
- 发展生物学 发展生物学
- 动物科学动物科学
背景情况:
- 羊的骨肌肉发育对于肉类和羊毛生产至关重要.
- 了解三维 (3D) 基因组在基因调节中的作用是关键.
- 在绵羊肌肉发育过程中,动态色素结构的理解很少.
研究的目的:
- 在羊骨肌肉发育过程中调查动态3D基因组结构,转录组和表观基因组.
- 了解染色体结构的变化如何影响绵羊的基因表达和肌肉发育.
主要方法:
- 使用了Hi-C,RNA-seq和ChIP-seq的技术.
- 分析了90天 (D90) 和120天 (D120) 的胎儿的绵羊骨肌组织.
- 检查了染色体区,拓关联域 (TAD) 和循环结构的变化.
主要成果:
- 观察到从D90到D120的肌肉纤维从缓慢转变为快速的转变.
- 在3D基因组结构中检测到显著的重组,包括隔间切换和改变的TAD和循环.
- 通过长距离相互作用,确定了SOX6和PIK3R1参与肌肉发育的调节元件.
结论:
- 介绍了第一个动态的3D染色体结构数据,用于羊胎儿骨肌.
- 证明了3D基因组结构参与调节羊肌肉发育期间的基因表达.
- 识别了新的cis-regulatory元素,并提供了对绵羊肌肉生长机制的见解.
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