一个甲基酸酶-PII蛋白超复合物的冷-EM结构
Rajnandani Kashyap1, Thomas M Deere2, Ahmed Dhamad2
1Department of Biochemistry and Molecular Biology, St. Louis University School of Medicine, St. Louis, MO, USA.
bioRxiv : the preprint server for biology
|September 18, 2025
概括
研究人员发现了古人类的化酶是如何调节的. PII蛋白与酶结合,形成一个抑制活性的超级复合体,但这种抑制被细胞信号逆转,揭示了对固化的新见解.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 微生物学 微生物学
背景情况:
- 基酶是全球循环的关键金属酶.
- 细菌化酶已经得到了很好的研究,但古人类化酶的调节仍然不清楚.
- 已知甲基生物能固定,但它们的酶结构是未知的.
研究的目的:
- 为了确定古代酸酶的结构.
- 阐明甲基生物中固化的调节机制.
主要方法:
- 使用冷电子显微镜 (cryo-EM) 来确定结构.
- 进行生物化学测试以测量酶活性.
主要成果:
- 从*Methanosarcina acetivorans*获得一个酶-PII超复合物的3.1 Å冷-EM结构.
- 结构揭示了三个NifDK异构四基因,由六个PII复合体组成桥梁,形成一个不活跃的状态.
- PII复合体的结合被ADP和2-酸调节,将抑制与细胞能量和状态联系起来.
- 2-氧格酸盐和ATP释放了PII复合体,增加了NifDK活动的三倍.
结论:
- 发现了一种新型的调节机制,涉及PII驱动的甲基生物中的基酶寡合化.
- 这种高阶结构控制着酶活动,为其演变和生物技术潜力提供了新的见解.
相关概念视频
Cryo-electron Microscopy
4.2K
Conventional electron microscopy (EM) involves dehydration, fixation, and staining of biological samples, which distorts the native state of biological molecules and results in several artifacts. Also, the high-energy electron beam damages the sample and makes it difficult to obtain high-resolution images. These issues can be addressed using cryo-EM, which uses frozen samples and gentler electron beams. The technique was developed by Jacques Dubochet, Joachim Frank, and Richard Henderson, for...
4.2K
Nucleoid
847
The nucleoid represents a structurally and functionally distinct region within prokaryotic cells, where the cell's DNA and associated proteins are housed. Unlike eukaryotic cells, prokaryotes lack a membrane-bound nucleus, and the nucleoid facilitates the organization and accessibility of the genetic material within this constraint. The DNA in most bacteria and archaea exists as a single, circular, double-stranded molecule that is highly compacted through supercoiling and interactions with...
847
Diversity of Archaea III
325
Crenarchaeota, a prominent phylum of Archaea, is remarkable for its ability to thrive in extreme environments characterized by high temperatures and acidity. These microorganisms inhabit sulfuric hot springs, volcanic systems, and submarine hydrothermal vents, where temperatures often exceed 100°C. The unique adaptations of Crenarchaeota not only allow survival under such extreme conditions but also provide insights into the mechanisms of life in primordial Earth-like...
325
Archaeal Cell Wall
1.0K
Archaeal cell walls are structurally and compositionally distinct from their bacterial counterparts, lacking the characteristic peptidoglycan layer found in most bacteria. Instead, archaeal cell walls exhibit remarkable diversity, utilizing materials such as pseudomurein, polysaccharides, and proteins to construct their protective outer layers. This structural flexibility is closely tied to archaea's ecological adaptability.S-Layers: The Common Archaeal Cell WallThe S-layer is the most...
1.0K
Structure of Amines
3.2K
The hybridized nitrogen atom in amines possesses a lone pair of electrons and is bound to three substituents with a bond angle of around 108°, which is less than the tetrahedral angle of 109.5°. However, the C–N–H bond angle is slightly larger at 112°, with a carbon–nitrogen bond length of 147 pm. This carbon–nitrogen bond length of of amines is longer than the carbon–oxygen bond of alcohols (143 pm) but shorter than alkanes’ carbon–carbon bond (154 pm). These aspects are...
3.2K
The Supercomplexes in the Crista Membrane
2.9K
The mitochondrial cristae membrane is the primary site for the oxidative phosphorylation (OXPHOS) process of energy conversion mediated through respiratory complexes I to V. These complexes have been widely studied for decades, and it has been proven that they form supramolecular structures called respiratory supercomplexes (SC). These higher-order complexes may be crucial in maintaining the biochemical structure and improving the physiological activity of the individual complexes while...
2.9K


