一个基于图形神经网络的方法,用于从多视图数据中预测SARS-CoV-2-人类蛋白相互作用.
Sumanta Ray1,2, Syed Alberuni3, Alexander Schönhuth2
1Data Science Unit, The West Bengal National University of Juridical Sciences, Kolkata, West Bengal, India.
PloS one
|September 25, 2025
概括
这项研究引入了一个深度学习模型来预测SARS-CoV-2-人类蛋白相互作用,确定了472个高可信度链接. 这促进了COVID-19治疗的药物重新定位,通过揭示潜在的候选药物,如lenalidomide.
科学领域:
- 计算生物学是一种计算生物学.
- 病毒学 病毒学
- 药物发现 药物发现
背景情况:
- 由于COVID-19的流行,需要快速开发治疗策略.
- 准确的分子相互作用数据对于in silico药物重定向模型至关重要.
- 现有的SARS-CoV-2人类相互作用数据集在高可信度相互作用方面是有限的.
研究的目的:
- 通过预测高可靠性SARS-CoV-2-人类蛋白相互作用来扩展现有资源.
- 开发和验证基于深度学习的多视图神经网络方法,用于交互预测.
- 为了确定COVID-19治疗的潜在药物重用候选人.
主要方法:
- 利用基于深度学习的多视图图形神经网络方法,实现最佳的运输集成.
- 来自蛋白质序列,基因本体学术语和物理相互作用数据的综合特征.
- 通过全面战略验证预测,并与基线方法比较性能.
主要成果:
- 成功预测了280个宿主蛋白和27个SARS-CoV-2蛋白之间的472个高可信度相互作用.
- 实现了强大的预测性能,ROC-AUC得分从83.1%到85.9%不等.
- 确定了lenalidomide和pirfenidone作为COVID-19的潜在药物重新定位候选药物.
结论:
- 开发的多视图图神经网络框架为SARS-CoV-2-宿主蛋白相互作用提供了准确和全面的预测.
- 这些发现为加快对抗COVID-19的药物重定向努力提供了宝贵的资源.
- 该研究强调了整合多种数据源的潜力,以改善分子相互作用预测.
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