通过敲除操作量化干预因果关系
Xinyan Zhang1,2, Luonan Chen1,3,4
1Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai 200031, China.
Science advances
|October 1, 2025
概括
我们开发了仿制条件相互信息 (KOCMI),用于在生物网络中准确的因果推理. 这种方法在不需要网络结构知识的情况下推断干预因果关系,优于现有的方法.
科学领域:
- 计算生物学 计算生物学
- 系统生物学 系统生物学
- 网络科学 网络科学
背景情况:
- 因果推理对于理解复杂的生物机制至关重要.
- 从计算上推断生物网络的因果关系仍然是一个重大挑战.
研究的目的:
- 引入敲击条件互惠信息 (KOCMI),这是推断干预直接因果关系的新标准.
- 通过使用各种数据类型,在不需要先前了解网络结构的情况下实现因果推断.
主要方法:
- 在KOCMI中,使用一个淘汰操作作为对变量进行虚拟干预.
- 它估计了虚拟干预前后的分布不变性,以确定因果关系.
- 该方法适用于时间独立和时间序列数据,以及带循环的网络.
主要成果:
- 即使在具有反循环的复杂网络中,KOCMI也能准确量化因果关系.
- 该方法证明了与do-calculus的理论一致性,但没有其结构先决条件.
- 与基准和现实世界数据集的现有方法相比,KOCMI表现出卓越的性能.
结论:
- 科克米是干预因果推理的强大,理论上健全和经过实验验证的工具.
- 它提供了一种强大的方法来揭示生物系统中的因果机制.
- 该方法通过解决网络因果关系的关键挑战来推进计算生物学.
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