使用整体机器学习和分子描述器对法医化合物的保留时间预测
1Akdeniz University, Department of Biology, Antalya, Türkiye.
概括
使用整体机器学习模型预测保留时间 (RTs) 显著提高了法医毒理学工作流程. 使用广泛的分子描述器的XGBoost在对各种法医化合物的RT预测中取得了最高的准确性.
科学领域:
- 法医化学 法医化学
- 计算化学计算化学
- 分析化学 分析化学
背景情况:
- 保留时间 (RT) 预测对于优化法医毒理学染色学工作流程至关重要.
- 高通量和非定位分析从准确的RT预测中获益显著.
研究的目的:
- 为了比较四个整体机器学习模型的性能,用于预测法医化合物的RTs.
- 评估分子描述符对RT预测准确性的影响.
主要方法:
- 四个组合模型 (随机森林,额外的树木,XGBoost,LightGBM) 被训练和测试.
- 化合物被RDKit描述符,Mordred描述符和摩根指纹表示.
- 实验RTs是在标准化的反相液态染色学条件下测量.
主要成果:
- 使用扩展特征空间 (>2000个分子特征) 的模型表现优于使用基本描述符的模型.
- XGBoost展示了最高的预测能力,实现了0.718的R2和1.23.3的RMSE.
- 特性重要性分析显示,疏水性,尺寸和拓/电子特征影响RTs.
结论:
- 集体学习模型是法医毒理学中RT预测的有价值工具.
- 扩展的分子描述器提高了预测准确性,XGBoost显示出卓越的性能.
- 这种方法在化合物选和染色学方法开发方面具有实际实用性.
更多相关视频
09:04Identifying Per- and Polyfluorinated Chemical Species with a Combined Targeted and Non-Targeted-Screening High-Resolution Mass Spectrometry Workflow
Published on: April 18, 2019
13.1K
09:09Preparation of Human Tissues Embedded in Optimal Cutting Temperature Compound for Mass Spectrometry Analysis
Published on: April 27, 2021
2.6K
相关概念视频
Drug Concentration Versus Time Correlation
2.0K
The plasma drug concentration-time curve is a crucial tool in pharmacokinetics, representing the drug's concentration in plasma at different time intervals post-administration. This curve illustrates the drug's journey from absorption into the systemic circulation, distribution to body tissues, and eventual elimination through excretion or biotransformation.
Two pivotal parameters are the minimum effective concentration (MEC) and the minimum toxic concentration (MTC). The MEC is the...
Two pivotal parameters are the minimum effective concentration (MEC) and the minimum toxic concentration (MTC). The MEC is the...
2.0K
Predicting Molecular Geometry
45.0K
VSEPR Theory for Determination of Electron Pair Geometries
45.0K
Mechanistic Models: Compartment Models in Individual and Population Analysis
245
Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least...
245
Noncompartmental Analysis: Mean Residence Time
569
According to statistical moment theory, mean residence time (MRT) is an important measure in pharmacokinetics. MRT can be defined as the expected mean of a probability density function distribution. It provides valuable insights into drug disposition in the body.
After the administration of a drug through intravenous bolus injection, the drug molecules are distributed throughout the body and remain there for varying periods. The MRT represents the average time these drug molecules stay in the...
After the administration of a drug through intravenous bolus injection, the drug molecules are distributed throughout the body and remain there for varying periods. The MRT represents the average time these drug molecules stay in the...
569
Predicting Products: SN1 vs. SN2
15.9K
Nucleophilic substitution reactions of alkyl halides can proceed via an SN1 or an SN2 mechanism. While in SN2 reactions, the nucleophile attacks the substrate simultaneously as the leaving group departs, in SN1 reactions, the substrate first dissociates to give the carbocation intermediate. Various factors such as the structure of the substrate, the strength of the nucleophile, and the nature of the solvent promote one mechanism over the other.
With increased substitution on the alkyl halide,...
With increased substitution on the alkyl halide,...
15.9K
