交换代谢物的细胞经济学以可预测的方式改变了微生物交易伙伴的比率
Martina Du1, Jeremy M Chaćon2, Heejoon Park1
1Department of Chemical and Biological Engineering, Center for Biofilm Engineering, Montana State University, Bozeman, Montana 59717, United States.
ACS synthetic biology
|October 10, 2025
概括
微生物联盟以平衡代谢负担的比例聚集在一起,即使有不同的代谢物交换. 这个细胞经济原理预测和控制微生物社区结构.
科学领域:
- 微生物学 微生物学
- 系统生物学 系统生物学
- 合成生物学 合成生物学
背景情况:
- 微生物通常存在于复杂的联盟中,但控制它们的组装和相互作用的规则仍然不太清楚.
- 了解联盟组合对于生物技术中的应用和解释自然微生物生态系统至关重要.
研究的目的:
- 测试一种细胞经济假设,该假设预测具有必需代谢物交换的微生物联盟将在代谢负担均共享的比例上聚集.
- 使用ATP等价物量化代谢负担,并为联盟组建开发预测框架.
主要方法:
- 工程 *Escherichia coli* 共同培养物,以强制交换酸盐和L-氨酸.
- 通过改变氧气可用性和关闭ATP合成酶来操纵代谢负担.
- 基于ATP等效的量化代谢负担,考虑流量,分子量,酶要求和能量密度.
主要成果:
- 三种合成共同培养在预测的应变比率上组装在一起,反映了合作伙伴之间的同等代谢负担.
- 通过操纵氧气可用性和细胞表型,应变比被理性地改变了20倍.
- 代谢负担理论准确地预测了另外七种已发表的共同种植中的贸易伙伴比率.
结论:
- 代谢物交换负担可以使用ATP等效量化,为联盟组装提供通用度量.
- 该框架提供了一个解释自然微生物联盟的理论,以及控制合成微生物群落的实际工具.
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