闪亮DegSEM:通过结构方程建模,用于基因表达研究中的途径扰乱分析的交互式应用程序
Zhehan Jiang1,2, Jihong Zhang3, Yuanfang Liu1
1Institute of Medical Education, Peking University Health Science Center, Beijing, China.
PeerJ
|October 15, 2025
概括
ShinyDegSEM是一种新的R Shiny工具,用于分析基因表达数据. 它有助于研究人员识别扰乱的途径,并了解基因调节网络,使复杂的分析可访问.
科学领域:
- 生物信息学是一种生物信息学.
- 系统生物学 系统生物学
- 基因组学就是基因组学.
背景情况:
- 了解表型变异需要剖析复杂的生物途径和基因调节网络.
- 识别扰乱路径及其传播是生物研究的一个关键挑战.
研究的目的:
- 介绍ShinyDegSEM,一种交互式R Shiny应用程序,用于基因表达研究中的途径扰乱分析.
- 为识别差异表达基因 (DEG) 提供一个用户友好的工具,并使用结构方程建模 (SEM) 发现扰乱路径模块.
主要方法:
- 使用SEM进行路径扰动分析.
- 集成了DEG检测 (微阵列的显著性分析) 和通路分析 (信号通路影响分析).
- 具有用于数据上传,分析参数选择和结果可视化的交互式接口.
主要成果:
- 闪亮DegSEM促进了DEGs的识别和路径模型的构建.
- 该工具可以对这些模型进行评估,以精确确定扰乱的路径模块.
- 提供了对放松调节的基因和改变的基因-基因关系的洞察力.
结论:
- ShinyDegSEM简化了基因表达数据的途径扰乱分析.
- 该应用程序使研究人员,包括新手,能够探索复杂的基因调节机制.
- 提供从DEG检测到基于SEM的模型改进和比较的全面工作流.
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