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Cancer-Associated Fibroblasts from Mouse Mammary Tumors as Tools for Molecular and Computational Studies
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癌症基因组的进化历史的统计推断

Khanh N Dinh1, Roman Jaksik2, Marek Kimmel3

  • 1Department of Statistics, Columbia University, New York, New York 10027, USA.

Statistical science : a review journal of the Institute of Mathematical Statistics
|October 16, 2025
PubMed
概括

这项研究比较了癌症进化模型,发现出生死亡和凝聚方法,为瘤细胞群产生可比的场所频谱 (SFS). 该研究还引入了一种选择性扫描模型来分析瘤史和数据预处理效应.

关键词:
癌症的演变 癌症的演变出生死亡的过程.大量测序批量测序.克隆性选择 克隆性选择凝聚剂 凝聚剂 凝聚剂普洛伊迪 (Ploidy) 是一个平的人.网站频谱频谱的频谱.瘤异质性的异质性

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科学领域:

  • 计算生物学 计算生物学
  • 癌症基因组学 癌症基因组学
  • 进化遗传学 进化遗传学

背景情况:

  • 从突变数据中建模癌症进化是至关重要的.
  • 经典的人口遗传学和分支过程是常见的建模框架.
  • 站点频谱 (SFS) 是DNA序列数据的关键总结统计数据.

研究的目的:

  • 为了比较来自出生死亡过程的场所频谱 (SFS) 与癌症进化中的凝聚模型.
  • 引入和评估一种结合选择性扫描的瘤进化模型.
  • 将理论模型应用于真实癌症基因组数据.

主要方法:

  • 利用出生死亡过程和凝聚模型来推断癌症进化.
  • 从大量瘤测序数据中估计的SFS,按突变分数分组网站.
  • 开发了一种新的瘤进化模型,使用选择性扫描.

主要成果:

  • 出生死亡和凝聚模型对于典型的瘤参数产生数量可比的SFS,尽管采样机制不同.
  • 提出的选择性扫描模型有助于了解瘤史.
  • 证明了数据预处理对进化模型的影响.

结论:

  • 出生死亡和融合模型都为癌症演变提供了宝贵的见解.
  • 选择性扫描模型增强了瘤发育的分析.
  • 这些发现适用于现实世界的癌症基因组数据集,例如来自癌症基因组图谱的数据集.