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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

24.6K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
24.6K
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

9.3K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
9.3K
Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

7.3K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
7.3K
Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

2.1K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
2.1K
Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

3.9K
3.9K
Regulation of Expression Occurs at Multiple Steps02:24

Regulation of Expression Occurs at Multiple Steps

25.7K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
25.7K

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相关实验视频

Updated: Jan 14, 2026

Chromatin Immunoprecipitation ChIP in Mouse T-cell Lines
11:39

Chromatin Immunoprecipitation ChIP in Mouse T-cell Lines

Published on: June 17, 2017

18.8K

跨模态对比学习通过染色体潜能分析来解码发育调节特征.

Yueyuxiao Yang1, Chenxi Xie1, Qiushun He1

  • 1MGI Tech Co., Ltd., Shenzhen 518083, China.

GigaScience
|October 17, 2025
PubMed
概括

新的框架Attune集成了单细胞的基因表达和染色质可访问性数据. 这使得我们能够更好地理解基因调节和预测基因活性.

科学领域:

  • 基因组学就是基因组学.
  • 计算生物学 计算生物学
  • 分子生物学分子生物学

背景情况:

  • 多模式单细胞数据,同时测量染色质可访问性和转录性,为监管分析提供了统一的方法.
  • 整合多种omics数据对于全面了解细胞机制至关重要.

研究的目的:

  • 介绍Attune,一个交叉模式的对比学习框架,用于对准基因表达和染色体可访问性数据.
  • 为了证明Attune在奥米克集成,基因表达预测和监管推理方面的有效性.

主要方法:

  • 开发了Attune,一个跨模式的对比学习框架.
  • 采用基于变压器的跨模式注意力来推断监管相互作用.
  • 与omics集成和预测的现有方法对比Attune的性能.

主要成果:

  • 在整合多式联络数据和预测基因表达方面,Attune表现出卓越的性能.
  • 该框架成功推断了调控相互作用,并确定了细胞亚型中的差异信号.
  • 阿图恩揭示了对转录因子的染色质潜力,并阐明了在分化过程中的细胞状态过渡.

结论:

  • Attune提供了一个多功能框架,用于整合基因表达和染色体可访问性数据.
关键词:
染色质潜在分析分析相反的学习学习学习.发展规则 发展规则多式联络 多式联络 多式联络

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A Method to Study de novo Formation of Chromatin Domains
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A Method to Study de novo Formation of Chromatin Domains

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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation

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Last Updated: Jan 14, 2026

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Chromatin Immunoprecipitation ChIP in Mouse T-cell Lines

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A Method to Study de novo Formation of Chromatin Domains
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A Method to Study de novo Formation of Chromatin Domains

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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
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Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation

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  • 这种方法有助于推断调节机制和基因表达预测.
  • Attune能够进行先进的奥米克分析,并更深入地了解细胞调节.