一个包含素化学的化学反应途径的数据集
Minhyeok Lee1, Jinyoung Jeong1, Islambek Ashyrmamatov2
1Department of Chemistry, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul, 03722, Republic of Korea.
Scientific data
|October 20, 2025
概括
一个新的数据集,Halo8,通过包括多样化的素化学来增强机器学习原子间潜力 (MLIP). 本资源改进了药物发现,材料科学和催化剂的MLIP.
科学领域:
- 计算化学的计算化学
- 材料科学 材料科学 材料科学
- 药物发现 药物发现 药物发现
背景情况:
- 机器学习原子间潜力 (MLIP) 正在彻底改变计算化学,但需要高质量,多样化的训练数据.
- 现有的数据集缺乏足够的素覆盖范围,尽管素在药品和材料中的流行程度很高.
- 素 (,,) 在约25%的药品和许多先进材料中起着至关重要的作用.
研究的目的:
- 为弥补培训MLIPs的含有素数据的差距.
- 创建一个全面的数据集,涵盖反应途径中的,和化学.
- 为了提高MLIP的预测能力,用于含有素的系统.
主要方法:
- 开发了一种高效的多层次计算工作流程,比DFT提高了110倍的速度.
- 从19,000个反应路径中生成了Halo8数据集,其中包含了约2000万个量子化学计算.
- 从GDB-13中加入新的化分子和重新计算的Transition1x反应与系统的化物替代.
- 使用 ωB97X-3c 理论水平进行了所有计算.
主要成果:
- Halo8数据集系统地涵盖了反应路径采样中的,和化学.
- 它包括各种化学环境的精确能量,力,双极时刻和部分电荷.
- 验证证实,Halo8捕捉了反应系统的基本结构扭曲和化学细微差别.
- 该数据集显著扩大了与化化合物相关的化学多样性.
结论:
- Halo8提供了一个有价值的,大规模的数据集,对于训练强大的MLIP至关重要.
- 它可以进行更准确的模拟,用于药物发现,材料设计和涉及素的催化.
- 该数据集有助于开发下一代计算化学工具.
相关概念视频
Halogenation of Alkenes
18.4K
Halogenation is the addition of chlorine or bromine across the double bond in an alkene to yield a vicinal dihalide. The reaction occurs in the presence of inert and non-nucleophilic solvents, such as methylene chloride, chloroform, or carbon tetrachloride.
Consider the bromination of cyclopentene. Molecular bromine is polarized in the proximity of the π electrons of cyclopentene. An electrophilic bromine atom adds across the double bond, forming a cyclic bromonium ion intermediate.
Consider the bromination of cyclopentene. Molecular bromine is polarized in the proximity of the π electrons of cyclopentene. An electrophilic bromine atom adds across the double bond, forming a cyclic bromonium ion intermediate.
18.4K
Reactions at the Benzylic Position: Halogenation
3.5K
Benzylic halogenation takes place under conditions that favor radical reactions such as heat, light, or a free radical initiator like peroxide.
3.5K
Reactions of α-Halocarbonyl Compounds: Nucleophilic Substitution
3.9K
Nucleophilic substitution in α-halocarbonyl compounds can be achieved via an SN2 pathway. The reaction in α-haloketones is generally carried out with less basic nucleophiles. The use of strong basic nucleophiles leads to the generation of α-haloenolate ions, which often participate in other side reactions.
3.9K
Electrophilic 1,2- and 1,4-Addition of X2 to 1,3-Butadiene
3.4K
Electrophilic addition of halogens to alkenes proceeds via a cyclic halonium ion to form a 1,2-dihalide or a vicinal dihalide.
3.4K
Base-Promoted α-Halogenation of Aldehydes and Ketones
4.1K
α-Halogenation of aldehydes and ketones is a reaction involving the substitution of α hydrogens with halogens in the presence of a base. The reaction begins with the abstraction of α hydrogen by the base to produce a nucleophilic enolate ion. This intermediate undergoes a subsequent nucleophilic substitution with the halogen to produce a monohalogenated carbonyl compound. If the starting substrate has more than one α hydrogen, it is difficult to stop the reaction...
4.1K
Halogens
23.3K
Group 17 elements, known as halogens, are nonmetals. At room temperature, fluorine and chlorine are gases, bromine is a liquid, and iodine a solid. Astatine is a highly unstable radioactive element, so currently, most of its properties are unknown due to its short half-life. Tennessine is a synthetic element also predicted to be in this group.
23.3K


