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相关概念视频

DNA-only Transposons02:57

DNA-only Transposons

17.2K
DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
17.2K
Overview of Transposition and Recombination02:13

Overview of Transposition and Recombination

18.8K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
18.8K
Transposons01:24

Transposons

1.3K
Transposons, or "jumping genes," are small mobile genetic elements (MGEs) that range from 700 to 40,000 base pairs in length. They are found in all organisms and can move within the same chromosome or transfer to different chromosomes. In some cases, transposons can also jump between different host DNA molecules, such as plasmids or viruses, contributing to genetic variability.Barbara McClintock first discovered these mobile genetic elements in the 1940s while studying maize genetics, and she...
1.3K
LTR Retrotransposons03:08

LTR Retrotransposons

19.4K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
19.4K
Eukaryotic Transcription Activators02:42

Eukaryotic Transcription Activators

12.5K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
12.5K
Non-LTR Retrotransposons03:18

Non-LTR Retrotransposons

13.2K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
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相关实验视频

Updated: Jan 14, 2026

Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
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Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations

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在染色体外DNA中从可转移元素中激活增强剂.

Katerina Kraft1,2, Sedona E Murphy3,4,5,6, Matthew G Jones1,7

  • 1Center for Personal Dynamic Regulomes, Stanford University School of Medicine, Stanford, CA, USA.

Nature cell biology
|October 21, 2025
PubMed
概括
此摘要是机器生成的。

在侵袭性癌症中,外染色体DNA (ecDNA) 可以包含重复的元素. 这些元素,就像LINE/L1片段一样,在ecDNA上变得功能性,推动MYC瘤基因表达和瘤进化.

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Lentiviral Vector Platform for the Efficient Delivery of Epigenome-editing Tools into Human Induced Pluripotent Stem Cell-derived Disease Models
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Real-Time Quantification of the Effects of IS200/IS605 Family-Associated TnpB on Transposon Activity
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相关实验视频

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Lentiviral Vector Platform for the Efficient Delivery of Epigenome-editing Tools into Human Induced Pluripotent Stem Cell-derived Disease Models
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Real-Time Quantification of the Effects of IS200/IS605 Family-Associated TnpB on Transposon Activity
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科学领域:

  • 在瘤学瘤学.
  • 基因组学就是基因组学.
  • 分子生物学分子生物学

背景情况:

  • 外染色体DNA (ecDNA) 对于瘤基因放大和侵袭性癌症的异质性至关重要.
  • 移植元素的重新激活在癌症中很常见,但它们在ecDNA上的作用尚不清楚.

研究的目的:

  • 研究可移植元素在结直肠癌中对ecDNA的作用.
  • 了解ecDNA如何利用重复的元素来影响癌症的进展.

主要方法:

  • 在MYC增强的ecDNA.DNA的3D架构映射.
  • 克里斯普尔捕获,克里斯普尔干扰和记者分析.
  • 为可转移元素丰富的ecDNA相互作用元素的识别.

主要成果:

  • 鉴定了68个与ecDNA相互作用的元素,其中许多具有可转移的元素,经常集成到ecDNA中.
  • 一个特定的LINE/L1片段 (L1M4a1#) 在ecDNA上与MYC共同放大,并显示了增强剂活性.
  • 这个片段对于癌细胞适应性在ecDNA增强环境中至关重要.

结论:

  • 重复的元素可以被重新激活,并在ecDNA上起作用,驱动瘤基因表达.
  • ecDNA利用重复的元素来塑造癌症表型,影响瘤的进化.
  • 这些发现对癌症诊断和治疗策略有影响.