SEND:一套工具,可以轻松共享相关的生物数据
Rodolfo S Allendes Osorio1,2, Yi-An Chen2, Kenji Mizuguchi2,3
1Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka, 2-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan.
Database : the journal of biological databases and curation
|October 29, 2025
概括
SEND (简单共享生物信息数据) 是一套新的工具,旨在简单地和可定制地共享各种生物数据. 这种生物信息学解决方案促进了研究人员的数据链接和可访问性.
科学领域:
- 生物信息学是一种生物信息学.
- 数据管理数据管理
- 计算生物学 计算生物学
背景情况:
- 分享异质和相关的生物数据带来了重大挑战.
- 现有的数据共享平台往往缺乏灵活性和定制性.
研究的目的:
- 介绍SEND (轻松共享生物信息数据),这是一个新的工具套件.
- 为了使异质和链接生物数据的易于和高度可定制的共享.
主要方法:
- 开发一套生物信息学工具.
- 在GitHub上提供免费可用的代码.
- 通过DockerHub.com分发Docker图像用于系统组件.
主要成果:
- SEND提供了一个易于使用的生物数据共享平台.
- 该系统支持异质和链接的数据类型.
- 发送是高度可定制,以满足不同的用户需求.
结论:
- SEND提供了一个灵活且易于使用的生物数据共享解决方案.
- 开源性质和容器化增强了采用和可用性.
- 通过改善数据可访问性来促进合作研究.
相关概念视频
02:54Evolutionary Relationships through Genome Comparisons
6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K
01:12Statistical Software for Data Analysis and Clinical Trials
1.4K
Statistical software is pivotal in data analysis and clinical trials by providing tools to analyze data, draw conclusions, and make predictions. These software packages range from simple data management applications to complex analytical platforms, supporting various statistical tests, models, and simulation techniques. Their significance lies in their ability to handle vast amounts of data with precision and efficiency, enabling researchers to validate hypotheses, identify trends, and make...
1.4K
01:29Modern Molecular Taxonomy
576
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
576
03:36Genome Annotation and Assembly
20.5K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
20.5K
02:02Genomics
39.6K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
39.6K
01:20Applications of Molecular Taxonomy
503
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
503