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相关概念视频

Overview of Transposition and Recombination02:13

Overview of Transposition and Recombination

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Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
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DNA-only Transposons02:57

DNA-only Transposons

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DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure.
The donor site from where the transposon is excised is either degraded or...
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Transposons01:24

Transposons

1.3K
Transposons, or "jumping genes," are small mobile genetic elements (MGEs) that range from 700 to 40,000 base pairs in length. They are found in all organisms and can move within the same chromosome or transfer to different chromosomes. In some cases, transposons can also jump between different host DNA molecules, such as plasmids or viruses, contributing to genetic variability.Barbara McClintock first discovered these mobile genetic elements in the 1940s while studying maize genetics, and she...
1.3K
LTR Retrotransposons03:08

LTR Retrotransposons

19.4K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
19.4K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

11.6K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
11.6K
Types of Genetic Transfer Between Organisms02:18

Types of Genetic Transfer Between Organisms

30.5K
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
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相关实验视频

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Site-Directed φC31-Mediated Integration and Cassette Exchange in Anopheles Vectors of Malaria
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Site-Directed φC31-Mediated Integration and Cassette Exchange in Anopheles Vectors of Malaria

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利用可转移的元素:昆虫系统学的新前沿

Shiyu Du1, Feng Zhang1

  • 1Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing 211800, China; State Key Laboratory of Agricultural and Forestry Biosecurity, College of Plant Protection, Nanjing Agricultural University, Nanjing 211800, China.

Molecular phylogenetics and evolution
|October 30, 2025
PubMed
概括

昆虫基因组中的可转移元素 (TE) 可以帮助识别物种,特别是在分析它们的存在和副本数量时. 对物种划界更有用,而不是对更高层次的昆虫类型学.

科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.
  • 进化生物学 进化生物学

背景情况:

  • 昆虫基因组含有很大比例的非编码的重复序列,称为可转移元素 (TE).
  • 测序技术的进步使昆虫基因组的大规模探索和系统学中TE的潜力成为可能.
  • TEs在分类学层面上表现出差异化,这表明它们作为遗传学标记物的实用性.

研究的目的:

  • 评估可转移元素 (TE) 作为昆虫类遗传标记物的潜力.
  • 评估TEs在Drosophiloidea超级家族内的物种级分析中的有效性.
  • 探索全基因组TE特征,用于昆虫系统学和分类学中的应用.

主要方法:

  • 在128个Drosophiloidea物种基因组中确定了2390个特定物种的TE家族.
  • 量化TE副本数和构造的家族遗传树使用存在/缺席数据 (0/1编码) 通过最大的帕西蒙尼,最大的概率和贝叶斯推理.
  • 对正常化TE拷贝数进行了聚类分析,并评估了家族遗传信号强度 (RI值).

主要成果:

  • 基于TE的族系表现出与公认的族系表现的拓不一致,特别是在更高的分类层次 (51-55.8%的节点一致性).
  • 在较低的分类学水平 (低基) 上,TEs在54.5-68.2%的节点中单基复原.
关键词:
基因组是基因组的组成部分.昆虫 昆虫是一种昆虫.人类遗传学 是一个学科.可转移的要素是可以转移的.一个重复性的DNA DNA.

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相关实验视频

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  • 聚类分析有效地区分了密切相关的物种,具有较高RI值 (>0.5) 的TEs提高了家族遗传准确性 (NRFD 0.379-0.408).
  • 结论:

    • 可转移的元素在较低的分类层显示出更大的实用性,特别是在物种划分方面.
    • 测试实验可以有效地区分密切相关的昆虫物种,为昆虫系统学提供了有价值的工具.
    • 在下一代和第三代测序平台之间没有观察到TE性能的显著差异.