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相关概念视频

RNA-seq03:21

RNA-seq

11.7K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
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Ribosome Profiling02:24

Ribosome Profiling

4.0K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
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RNA Structure01:23

RNA Structure

78.7K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
78.7K
RNA Structure01:19

RNA Structure

7.1K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
7.1K
Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

14.6K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
14.6K
lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

9.8K
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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相关实验视频

Updated: Jan 12, 2026

Identification of RNAs Engaged in Direct RNA-RNA Interaction with a Long Non-Coding RNA
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Identification of RNAs Engaged in Direct RNA-RNA Interaction with a Long Non-Coding RNA

Published on: July 9, 2021

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通过RIC-seq分析揭示功能性远程RNA结构.

Sergey Margasyuk1, Dmitri D Pervouchine2

  • 1Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, Moscow, Russia.

Methods in molecular biology (Clifton, N.J.)
|November 1, 2025
PubMed
概括
此摘要是机器生成的。

在位 RNA 构成测序 (RIC-seq) 揭示了 RNA 结构和相互作用. 新的生物信息管道,RNAcontacts和PHRIC,分析RIC-seq数据以预测RNA-RNA相互作用和互补元素.

关键词:
自由能量是一种自由的能量.近距离结合法 接近结合法在RIC-seqq.有关RNA的接触者结构 RNA 结构 RNA 结构

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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions
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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions

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相关实验视频

Last Updated: Jan 12, 2026

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Identification of RNAs Engaged in Direct RNA-RNA Interaction with a Long Non-Coding RNA

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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions
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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions

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Identification of Footprints of RNA:Protein Complexes via RNA Immunoprecipitation in Tandem Followed by Sequencing RIPiT-Seq
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Identification of Footprints of RNA:Protein Complexes via RNA Immunoprecipitation in Tandem Followed by Sequencing RIPiT-Seq

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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 基因组学就是基因组学.

背景情况:

  • 对于生物功能来说,RNA的构造和结构至关重要.
  • 基于近距离结合的测试,如RIC-seq捕获体内RNA结构.
  • 了解RNA-RNA相互作用需要强大的计算工具.

研究的目的:

  • 开发和介绍两种新的生物信息管道,用于分析RIC-seq数据.
  • 为了使用RIC-seq.q.发现RNA-RNA相互作用.
  • 在RNA结构中预测稳定的互补元素.

主要方法:

  • 开发RNAcontacts管道,从RIC-seq数据中提取RNA接触点.
  • 开发PHRIC管道,以基于RNA接触来预测互补RNA结构.
  • 使用Snakemake实现两条管道,以提高可重复性和可扩展性.

主要成果:

  • RNAcontacts管道成功地识别了cis和trans中的RNA-RNA相互作用.
  • 通过预测嵌套的互补元素,PHRIC管道扩展了RNA接触.
  • 这两个管道都提供了一个可扩展和可重复的方法来分析转录组数据集.

结论:

  • 开发的生物信息管道为RNA结构和相互作用分析提供了强大的工具.
  • 这些工具有助于在生理学背景下研究RNA构造.
  • 斯纳克马凯的实施确保了RIC-seq数据的高效和统一的处理.