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相关概念视频

Phylogenetic Trees03:21

Phylogenetic Trees

49.2K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
49.2K
Genetic Screens02:46

Genetic Screens

5.6K
Genetic screens are tools used to identify genes and mutations responsible for phenotypes of interest. Genetic screens help identify individuals or a group of people at risk of developing  genetic diseases and help them with early intervention, targeted therapy, and reproductive options.
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...
5.6K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K
In-vitro Mutagenesis01:16

In-vitro Mutagenesis

16.0K
To learn more about the function of a gene, researchers can observe what happens when the gene is inactivated or “knocked out,” by creating genetically engineered knockout animals. Knockout mice have been particularly useful as models for human diseases such as cancer, Parkinson’s disease, and diabetes.
16.0K
Phylogeny01:23

Phylogeny

56.6K
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
56.6K
Genetic Variation01:25

Genetic Variation

1.2K
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
1.2K

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相关实验视频

Updated: Jan 11, 2026

Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline

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在OncotreeVIS-一个交互式图形用户界面用于可视化突变树队列.

Monica-Andreea Baciu-Drăgan1,2, Niko Beerenwinkel1,2

  • 1Department of Biosystems Science and Engineering, ETH Zürich, Basel 4056, Switzerland.

Bioinformatics advances
|November 10, 2025
PubMed
概括

oncotreeVIS是一种新的工具,用于使用突变树来可视化瘤进化. 它可以在队列层面详细检查和比较癌细胞类型,帮助计算瘤学研究.

科学领域:

  • 计算生物学 计算生物学
  • 癌症研究 癌症研究
  • 生物信息学是一种生物信息学.

背景情况:

  • 单细胞测序和计算方法允许通过突变树重建瘤进化史.
  • 现有的工具缺乏对突变树的详细可视化,队列级别比较和分析能力.

研究的目的:

  • 开发oncotreeVIS,一个交互式图形用户界面 (GUI) 用于可视化突变树队列.
  • 为了能够详细检查,比较和队列层面分析瘤类型.

主要方法:

  • 开发了oncotreeVIS作为一个交互式GUI,用于可视化突变树队列和后部分布.
  • 实现单个和联合遗传事件的可视化 (点突变,副本数量变化).
  • 启用了匹配子克隆,保存轨迹和药物基因相互作用的突出显示.

主要成果:

  • oncotreeVIS可方便对突变树集群和对对树距离进行视觉检查.
  • 该工具支持对瘤进化轨迹的队列级分析.
  • 它可以与现有的突变树推断工具集成.

结论:

  • oncotreeVIS通过提供先进的可视化和比较工具,增强了瘤基因的分析.

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  • 该工具支持计算瘤学研究,通过使队列层面对癌症演变的见解成为可能.
  • oncotreeVIS可以作为一个JavaScript库和一个Web应用程序,提供示例数据集.