在OncotreeVIS-一个交互式图形用户界面用于可视化突变树队列
Monica-Andreea Baciu-Drăgan1,2, Niko Beerenwinkel1,2
1Department of Biosystems Science and Engineering, ETH Zürich, Basel 4056, Switzerland.
Bioinformatics advances
|November 10, 2025
概括
oncotreeVIS是一种新的工具,用于使用突变树来可视化瘤进化. 它可以在队列层面详细检查和比较癌细胞类型,帮助计算瘤学研究.
科学领域:
- 计算生物学 计算生物学
- 癌症研究 癌症研究
- 生物信息学是一种生物信息学.
背景情况:
- 单细胞测序和计算方法允许通过突变树重建瘤进化史.
- 现有的工具缺乏对突变树的详细可视化,队列级别比较和分析能力.
研究的目的:
- 开发oncotreeVIS,一个交互式图形用户界面 (GUI) 用于可视化突变树队列.
- 为了能够详细检查,比较和队列层面分析瘤类型.
主要方法:
- 开发了oncotreeVIS作为一个交互式GUI,用于可视化突变树队列和后部分布.
- 实现单个和联合遗传事件的可视化 (点突变,副本数量变化).
- 启用了匹配子克隆,保存轨迹和药物基因相互作用的突出显示.
主要成果:
- oncotreeVIS可方便对突变树集群和对对树距离进行视觉检查.
- 该工具支持对瘤进化轨迹的队列级分析.
- 它可以与现有的突变树推断工具集成.
结论:
- oncotreeVIS通过提供先进的可视化和比较工具,增强了瘤基因的分析.
- 该工具支持计算瘤学研究,通过使队列层面对癌症演变的见解成为可能.
- oncotreeVIS可以作为一个JavaScript库和一个Web应用程序,提供示例数据集.
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