TEDD:一个全面的翻译效率动态数据库
Wenyan Lei1,2,3, Cuidan Li1,2, Hengyu Zhou1,2,4
1China National Center for Bioinformation, Beijing 100101, China.
Nucleic acids research
|November 11, 2025
概括
我们开发了TEDD,它是人类翻译效率 (TE),翻译比率 (TR) 和延长速度指数 (EVI) 的数据库. 它整合了多omics数据,以探索跨越各种生物背景的UTR特征的翻译调节.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 翻译对于基因表达和生物学表型至关重要.
- 在不同环境中量化翻译效率 (TE),启动 (TR) 和延伸 (EVI) 是有限的.
- UTR特征显著调节发育和疾病中的翻译.
研究的目的:
- 为人类TE,TR和EVI创建一个全面的数据库 (TEDD).
- 专注于5'/3' UTR特征在翻译调节中的作用.
- 为探索特定上下文的翻译控制提供资源.
主要方法:
- 整合了来自143个人类项目的1518个RNA-seq,Ribo-seq和RNC-seq样本.
- 在基因和转录水平计算了TE,TR和EVI指标.
- 有注释的监管5'/3' UTR特征用于详细分析.
主要成果:
- TEDD提供了24种组织/细胞类型,74种细胞系和52种疾病的综合数据.
- 这些指标与详细的UTR注释相配对,以便进行细致的调查.
- 该数据库能够在基因,转录和基因组之间进行多维比较.
结论:
- TEDD是研究人类翻译控制的宝贵资源.
- 它支持基础和翻译性研究,包括mRNA疫苗设计和基因治疗.
- 数据库有助于探索翻译调节机制及其应用.
相关概念视频
Improving Translational Accuracy
3.5K
3.5K
Improving Translational Accuracy
14.0K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
14.0K
Translation
155.0K
Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of...
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of...
155.0K
Translation
17.5K
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Proteins are...
Translation Produces the Building Blocks of Life
Proteins are...
17.5K
Termination of Translation
27.4K
The large ribosomal subunit has several important structures essential to translation. These include the peptidyl transferase center (PTC) - which is the site where the peptide bond is formed - and a large, internal, water-filled tube through which the nascent polypeptide moves. This latter structure is called the Peptide Exit Tunnel, and it begins at the PTC and spans the body of the large ribosomal subunit. During translation, as the nascent polypeptide chain is synthesized, it passes through...
27.4K
Termination of Translation
6.5K
6.5K


