Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Protein Diffusion in the Membrane01:24

Protein Diffusion in the Membrane

5.4K
Proteins show rotational as well as lateral diffusion across the membrane. The lateral diffusion of proteins was confirmed through the cell fusion experiment where mouse and human cells were fused, resulting in hybrid cells. When the human and mouse cells fused, the specific membrane proteins on human and mouse cells were marked with the red and green-fluorescent markers, respectively. Initially, the red and green fluorescence was located on the respective hemisphere of the cell. As time...
5.4K
Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

14.0K
Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
14.0K
Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

2.9K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.9K
Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

2.1K
2.1K
Protein and Protein Structure02:15

Protein and Protein Structure

86.7K
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
86.7K
Protein and Protein Structures02:15

Protein and Protein Structures

18.3K
18.3K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

On the state of protein function prediction: a report on the fourth CAFA challenge.

bioRxiv : the preprint server for biology·2026
Same author

ST-PARM: Pareto-Complete Inference-Time Alignment for Multi-Objective Protein Design.

bioRxiv : the preprint server for biology·2026
Same author

Current and future directions in network biology.

Bioinformatics advances·2024
Same author

Novel antibody language model accelerates IgG screening and design for broad-spectrum antiviral therapy.

bioRxiv : the preprint server for biology·2024
Same author

Predicting protein structure from single sequences.

Nature computational science·2024
Same author

Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.

Proteins·2023

相关实验视频

Updated: Jan 11, 2026

Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
07:08

Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues

Published on: July 14, 2015

7.7K

多模式扩散用于蛋白质序列和结构的联合设计.

Shaowen Zhu1, Siddhant Gulati2, Yuxuan Liu1

  • 1Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas, USA.

Protein science : a publication of the Protein Society
|November 14, 2025
PubMed
概括

本研究提出了一种新的计算方法,用于设计蛋白质序列和结构,从而实现更快,更具功能性的蛋白质生成. 实验结果显示了有希望的功能蛋白质设计,加速了未来的应用.

关键词:
扩散模型的扩散模型生成型模型是一种生成型模型.机器学习是机器学习.蛋白质设计 蛋白质设计

更多相关视频

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

16.0K
Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
05:08

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

918

相关实验视频

Last Updated: Jan 11, 2026

Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
07:08

Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues

Published on: July 14, 2015

7.7K
Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
09:51

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

Published on: July 16, 2017

16.0K
Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
05:08

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins

Published on: July 8, 2025

918

科学领域:

  • 蛋白质工程是指蛋白质工程.
  • 计算生物学 计算生物学
  • 结构生物学 结构生物学

背景情况:

  • 通过计算来设计功能性蛋白质对于基础科学和实际应用都至关重要.
  • 现有的方法经常在单独的阶段设计蛋白质序列和结构,这可能是低效的.

研究的目的:

  • 开发一个统一的生成框架,同时共同设计蛋白质序列和结构.
  • 为了实现连贯和功能性蛋白质设计的跨模式相互作用.

主要方法:

  • 一个生成框架,模拟蛋白质序列和结构的联合分布.
  • 使用三种模式表示残留物:类型,位置和方向,每一种都是通过扩散过程建模的.
  • 一个统一的架构,ReverseNet,带有图形注意力编码器和单独的投影仪,用于多式联网集成.

主要成果:

  • 拟议的模型 (JointDiff和JointDiff-x) 对单体结构的可比性或更好的可设计性比双阶段模型更好.
  • 模型速度快1-2个数量级,支持快速代设计.
  • 对绿色光蛋白 (GFP) 设计的实验验证实产生了具有可测量的光的新型功能变体.

结论:

  • 联合序列结构生成是可行的,可以加速功能性蛋白质设计.
  • 该框架为计算蛋白质工程的未来进步提供了基础.
  • 开源代码和模型可用于进一步的研究和应用.