长期固定对存档的人类神经组织的影响,用于基于测序的转录组学.
Stephanie Howe1, Heather McCann2, Zherui Xiong3
1Australian Institute of Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia.
Brain communications
|November 20, 2025
概括
长期组织固定对转录学中的RNA分子检测有影响. 延长固定阻碍了存档的大脑组织中的基因表达分析,影响了神经退行性疾病研究.
科学领域:
- 神经科学是一个神经科学.
- 分子生物学分子生物学
- 基因组学就是基因组学.
背景情况:
- 在研究罕见疾病方面,固定甲嵌入式 (FFPE) 组织非常有价值.
- 由于实际约束,档案组织往往被存储长时间.
研究的目的:
- 为了研究长期组织固定对基于测序的转录组学的影响.
- 评估不同固定时间的人类FFPE组织中的RNA质量和基因表达.
主要方法:
- 来自悉尼大脑银行的人类腰椎脊髓和下丘脑FFPE组织的分析.
- 评估RNA质量指标 (RNA完整数,DV200) 和探针结合效率.
- 测量中枢神经系统的基因表达水平.
主要成果:
- 扩展固定与RNA质量指标 (RNA完整数,DV200) 不相关.
- 固定时间对转录组探头结合和RNA分子检测产生了负面影响.
- 这导致基因表达量减少,损害了转录组的解释性.
结论:
- 长期组织固定可以阻碍转录组分析,影响基因表达数据的可靠性.
- 大脑银行实践的标准化和适应性对于与先进技术的兼容性至关重要.
- 需要合作,以确保存档的组织仍然适合未来的研究.
相关概念视频
Chromatin Structure Regulates pre-mRNA Processing
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
Master Transcription Regulators
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Ribosome Profiling
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
lncRNA - Long Non-coding RNAs
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA (lncRNA)...
Prokaryotic Gene Structure and Organization
Prokaryotic genomes exhibit a streamlined organization of coding and non-coding regions essential for gene expression and protein synthesis. While coding regions contain the genetic instructions for proteins or functional RNAs, non-coding regions regulate the precise transcription and translation of these genes.Coding Regions: Proteins and RNAsThe primary coding regions, known as structural genes, include sequences transcribed into messenger RNA (mRNA) and ultimately translated into...


