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相关概念视频

RNA Structure01:23

RNA Structure

78.7K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
78.7K
RNA Structure01:19

RNA Structure

7.0K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
7.0K
Nucleic Acid Structure01:25

Nucleic Acid Structure

8.4K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
8.4K
RNA Stability01:53

RNA Stability

35.6K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.6K
DNA Topoisomerases02:02

DNA Topoisomerases

34.7K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
34.7K
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

26.6K
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
26.6K

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相关实验视频

Updated: Jan 10, 2026

Functional Imaging of Viral Transcription Factories Using 3D Fluorescence Microscopy
09:03

Functional Imaging of Viral Transcription Factories Using 3D Fluorescence Microscopy

Published on: January 18, 2018

7.4K

伪结Visualizer:在三维RNA结构上的伪结的可视化.

Takumi Otagaki1, Goro Terai1, Kiyoshi Asai1

  • 1Department of Computational Biology and Medical Sciences (CBMS), The University of Tokyo, Kashiwa, Chiba, Japan.

PLoS computational biology
|November 20, 2025
PubMed
概括

伪结Visualizer软件在3D结构中识别和染色RNA伪结. 该工具帮助研究人员可视化复杂的RNA架构,改进结构分析和分子生物学应用.

科学领域:

  • 结构生物学 结构生物学
  • 计算生物学 计算生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • RNA伪结是影响RNA功能的关键结构动机.
  • 在复杂的3DRNA结构中可视化伪节点存在重大挑战.
  • 现有的伪结识别和可视化方法往往是有限的.

研究的目的:

  • 介绍PseudoknotVisualizer,这是一个用于识别和可视化RNA伪结的新型软件.
  • 为了能够清晰地描绘RNA三级结构内的伪结分布.
  • 加强RNA结构分析和研究生产力.

主要方法:

  • 开发专门的软件,名为PseudoknotVisualizer的软件.
  • RNA二次结构的分解成无伪结的层.
  • 在每个伪结层内对基因对进行颜色编码,用于可视化.
  • 作为PyMOL扩展的集成和提供命令行接口 (CLI).

主要成果:

  • 在RNA3D结构中成功识别和可视化伪结.
  • 通过颜色编码来促进伪结层可视化.
  • 为奇梅拉和PyMOL生成可视化命令.

更多相关视频

Analyzing and Building Nucleic Acid Structures with 3DNA
16:24

Analyzing and Building Nucleic Acid Structures with 3DNA

Published on: April 26, 2013

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RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

32.1K

相关实验视频

Last Updated: Jan 10, 2026

Functional Imaging of Viral Transcription Factories Using 3D Fluorescence Microscopy
09:03

Functional Imaging of Viral Transcription Factories Using 3D Fluorescence Microscopy

Published on: January 18, 2018

7.4K
Analyzing and Building Nucleic Acid Structures with 3DNA
16:24

Analyzing and Building Nucleic Acid Structures with 3DNA

Published on: April 26, 2013

21.2K
RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

Published on: May 31, 2013

32.1K

结论:

  • 伪结Visualizer有效地解决了RNA伪结可视化方面的挑战.
  • 该工具提高了RNA结构分析的清晰度.
  • 伪笔记Visualizer在分子生物学研究中具有广泛应用的潜力.