igv-reports:将交互式基因组可视化嵌入到HTML报告中,以帮助变种审查
James T Robinson1, Helga Thorvaldsdottir2, Jill P Mesirov1,3
1Department of Medicine, School of Medicine, University of California San Diego, La Jolla, CA, USA.
bioRxiv : the preprint server for biology
|November 24, 2025
概括
igv-reports是一个命令行工具,可以生成独立的HTML页面,用于交互式基因组数据可视化. 这些报告嵌入了读取对齐和注释,简化了变体检查,没有外部文件依赖.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
背景情况:
- 变种检查对于基因组分析至关重要.
- 现有的工具可能需要复杂的设置或外部数据.
- 简化可视化工作流程对于高效的研究至关重要.
研究的目的:
- 介绍igv-reports,一个新的命令行工具.
- 为了能够创建独立的HTML报告与交互式基因组可视化.
- 通过嵌入所有必要的数据和代码来促进变体检查.
主要方法:
- 开发了一个名为igv-reports的命令行工具.
- 实现了生成独立HTML页面的功能.
- 阅读对齐和注释的集成交互可视化.
主要成果:
- igv-reports成功地创建了独立的HTML报告.
- 这些报告嵌入了交互式基因组可视化.
- 生成的报告不需要外部数据文件依赖可视化.
结论:
- igv-reports简化了共享和检查基因组变异数据的过程.
- 该工具通过提供可访问的交互式报告来增强变体检查工作流程.
- 独立的HTML报告提高了基因组学研究中的数据可复制性和易用性.
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