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相关概念视频

Gene Duplication and Divergence02:37

Gene Duplication and Divergence

7.8K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
7.8K
Gene Families01:57

Gene Families

9.8K
Gene families consist of groups of genes proposed to have originated from a common ancestor. Typically these arise through events in which a gene or genes are mistakenly duplicated during cell division. Unlike their parent genes (which are subject to selection pressure to maintain function), these gene copies do not need to preserve their sequences and may evolve at a relatively faster rate.
Occasionally these regions can be adapted to take on new roles within the organism, becoming novel genes...
9.8K
Genome Size and the Evolution of New Genes03:21

Genome Size and the Evolution of New Genes

3.3K
3.3K
Genome Size and the Evolution of New Genes03:21

Genome Size and the Evolution of New Genes

9.0K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
9.0K
Synteny and Evolution02:31

Synteny and Evolution

3.7K
John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral...
3.7K
Exon Recombination02:32

Exon Recombination

4.1K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
4.1K

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相关实验视频

Updated: Jan 10, 2026

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

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发现了大量新的人类类比物.

Pradeep Bk1, Weixia Deng1, Mahsa Askary Hemmat1

  • 1Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology Bioinformatics and Computational Biology Program Iowa State University Ames, IA 50011 USA.

bioRxiv : the preprint server for biology
|November 24, 2025
PubMed
概括

这项研究引入了一个综合框架,以发现新的人类蛋白质类比物,这对于理解蛋白质进化和药物设计至关重要. 该方法结合了序列,结构和先进的AI工具,以识别以前未经注释的蛋白质及其功能.

科学领域:

  • 基因组学和生物信息学
  • 结构生物学 结构生物学
  • 计算生物学 计算生物学

背景情况:

  • 识别蛋白质对应物对于蛋白质进化,功能研究和药物设计至关重要.
  • 现有的基于序列的方法难以检测遥远的对应物,使许多人体蛋白质没有注释.
  • 需要采取全面的方法来克服当前同质检测的局限性.

研究的目的:

  • 开发和验证一个综合框架,用于发现新的人类蛋白质类比物.
  • 系统地识别和表征相似物,包括它们的催化残留物.
  • 增强对蛋白质功能格局和进化关系的理解.

主要方法:

  • 一个集成的同类检测框架,结合了BLASTp,MMseqs2,Foldseek和PROST (基于蛋白质语言模型的工具).
  • 在20647个人类蛋白质中进行了全对全的比较.
  • 使用结构比较和催化残留分析进行验证,特别是对于酶.

主要成果:

  • 发现了14个以前未被描述的人类血清碳氧酶,其中11个显示保存的催化三合体.
  • 鉴定了203个新的人体激酶对应物,包括163个主要集群中的代表新型亚型.
  • 鉴定了30种人类新型转录因子.

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Novel Sequence Discovery by Subtractive Genomics
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Novel Sequence Discovery by Subtractive Genomics

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Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER

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相关实验视频

Last Updated: Jan 10, 2026

An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

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Novel Sequence Discovery by Subtractive Genomics
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Novel Sequence Discovery by Subtractive Genomics

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Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER
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Detection of Rare Genomic Variants from Pooled Sequencing Using SPLINTER

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  • 使用结构对齐来预测未注释的血清蛋白酶的催化残留物.
  • 结论:

    • 综合框架成功地确定了大量的新型人类蛋白质对应物.
    • 结合序列,结构和基于人工智能的方法,扩大了蛋白质功能景观的发现.
    • 这些发现为未来关于蛋白质功能,进化和治疗应用的研究奠定了基础.