V-synthes2 - 下一代工具基于结构的虚拟选千兆级化学空间的下一代工具
Antonina L Nazarova1, Anastasiia V Sadybekov1, Arman A Sadybekov1
1University of Southern California.
Research square
|November 24, 2025
概括
通过自动化数十亿种化合物的虚拟查,V-SYNTHES2加速了药物发现. 这种增强的工作流改善了新药候选药物的可扩展性和目标识别.
科学领域:
- 计算化学是一种计算化学.
- 药物发现 药物发现
- 生物信息学是一种生物信息学.
背景情况:
- 计算查的可扩展性是药物发现的瓶.
- 之前的V-SYNTHES方法在自动化和化学空间大小方面受到限制.
- 需要对大型可合成化学库进行有效选.
研究的目的:
- 提供一个升级的V-SYNTHES2工作流程,增强自动化和可扩展性.
- 评估V-SYNTHES2在具有挑战性的药物标上的性能.
- 为了能够有效地选千兆级化学空间的候选药物.
主要方法:
- V-SYNTHES2采用最小计数库 (MEL) 片段的代对接.
- 引入了CapSelect,用于基于对接和姿势的自动碎片选择.
- 工作流程扩展到36亿个化合物的Enamine REAL空间.
主要成果:
- V-SYNTHES2表现出极好的丰富性和结合性姿势可重复性.
- 在包括GPCR和RNA结合位点在内的多种目标上成功进行计算基准.
- 在针对新目标的潜在选活动中进行实验验证.
结论:
- V-SYNTHES2是一个完全自动化的,可扩展的虚拟选工作流.
- 提供了一种强大的工具,可以有效地选大量的化学库.
- 有助于发现临床标的配体和候选药物.
相关概念视频
Structure-Activity Relationships and Drug Design
1.7K
Drug design is a dynamic field that involves discovering and developing new medications based on specific biological targets. This process heavily relies on structure-activity relationships (SAR) and quantitative structure-activity relationships (QSAR) to guide the design and optimization of efficient drugs.
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
1.7K
Molecular Models
43.4K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
43.4K
Predicting Molecular Geometry
44.5K
VSEPR Theory for Determination of Electron Pair Geometries
44.5K
VSEPR Theory
13.9K
Valence shell electron-pair repulsion theory (VSEPR theory) enables us to predict the molecular structure around a central atom from an examination of the number of bonds and lone electron pairs in its Lewis structure. The VSEPR model assumes that electron pairs in the valence shell of a central atom will adopt an arrangement that minimizes repulsions between these electron pairs by maximizing the distance between them. The electrons in the valence shell of a central atom form either bonding...
13.9K
Ligand Binding Sites
14.8K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
14.8K
Ligand Binding Sites
8.5K
8.5K


