进化和结构生物信息学将GPR89确定为LIMR蛋白超级家族的保存成员
Camila A Quercia-Raty1, Luka Robeson1, Sebastian E Brauchi1
1Physiology Department, Universidad Austral de Chile, Chile.
Computational and structural biotechnology journal
|November 24, 2025
概括
戈尔吉的pH调节器 (GPR89) 是一种蛋白质.
科学领域:
- 分子生物学分子生物学
- 进化生物学 进化生物学
- 生物信息学是一种生物信息学.
背景情况:
- GPR89,也称为戈尔吉pH调节器 (GPHR),是一种孤儿膜蛋白,在真核细胞系中保存.
- 它的进化历史,结构多样性和精确的功能在很大程度上仍未被描述.
研究的目的:
- 在整个尤卡里亚中对GPR89进行全面的生物信息分析.
- 阐明它的进化轨迹,结构特征和功能影响.
主要方法:
- 遗传学重建的研究.
- 基因组合成分析
- 序列保存评估 序列保存评估
- 结构建模 结构建模
主要成果:
- 在脊椎动物和血管植物中确定了GPR89的特定基因重复.
- 在预测的GPR89结构中观察到保存的跨膜核心和独特的细胞内螺旋螺旋针.
- 结构上集的GPR89与溶解物载体 (SLC) 蛋白和LIMR蛋白家族.
结论:
- GPR89表现出保存的结构特征,表明潜在的运输活动.
- 该研究建议将GPR89重新分类到LIMR超级家族中.
- 为了解GPR89的功能和演变提供了一个框架.
相关概念视频
Conserved Binding Sites
5.0K
Many proteins’ biological role depends on their interactions with their ligands, small molecules that bind to specific locations on the protein known as ligand-binding sites. Ligand-binding sites are often conserved among homologous proteins as these sites are critical for protein function.
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
5.0K
Conservation of Protein Domains Over Different Proteins
14.0K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
14.0K
G Protein-coupled Receptors
16.4K
G Protein-Coupled Receptors or GPCRs are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to sensory stimuli such as light, odors, hormones, cytokines, or neurotransmitters.
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
16.4K
Rab Proteins
4.9K
Rab proteins constitute the largest family of monomeric GTPases, of which 70 members are present in humans. Rab proteins and their effectors regulate consecutive stages of vesicle transport such as vesicle transport, docking, and fusion to the correct recipient membrane.
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
4.9K
Transducer Mechanism: G Protein–Coupled Receptors
3.9K
G Protein–Coupled Receptors (GPCRs) are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to various stimuli. GPCRs regulate critical physiological pathways and are excellent drug targets for treating diseases such as diabetes, cancer, obesity, depression, or Alzheimer's. Nearly 35% of approved drugs implement their therapeutic effects by selectively interacting with specific GPCRs.
GPCRs are also called heptahelical,...
GPCRs are also called heptahelical,...
3.9K
Covalently Linked Protein Regulators
8.6K
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
These groups modify specific amino acids in a protein....
8.6K


