Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Master Transcription Regulators02:23

Master Transcription Regulators

7.7K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
7.7K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

11.5K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
11.5K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

4.0K
4.0K
General Transcription Factors01:30

General Transcription Factors

6.7K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
6.7K
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

16.2K
Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
16.2K
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

5.4K
5.4K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Impact of Intrauterine Infusion of Autologous Platelet-Rich Plasma on Assisted Reproductive Outcomes in Patients With Recurrent Implantation Failure: A Meta-Analysis of Randomized Controlled Trials.

Reproductive medicine and biology·2026
Same author

Impact of repeated cryopreservation on embryo development and chromosomal ploidy.

Archives of gynecology and obstetrics·2026
Same author

Assessing psychometric properties of the revised Richards-Campbell Sleep Questionnaire based on COSMIN: a systematic review.

Frontiers in medicine·2026
Same author

A pathogen lncRNA secreted into rice sequesters a host miRNA for virulence.

Nature·2026
Same author

Diagnostic challenges and lessons learned of Guillain-Barré syndrome mimicking central nervous system infection - a case report.

BMC neurology·2026
Same author

Stem cells as an essential mediator of the exercise-tumorigenesis link.

Nature reviews. Cancer·2026

相关实验视频

Updated: Jan 10, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
09:07

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation

Published on: June 21, 2016

8.6K

基于动机的模型准确地预测了特定细胞类型的远端调节元素.

Paola Cornejo-Páramo1,2, Xuan Zhang1, Lithin Louis1

  • 1Victor Chang Cardiac Research Institute, Darlinghurst, NSW, Australia.

Nature communications
|November 24, 2025
PubMed
概括

我们开发了Bag-of-Motifs (BOM),一个简单而强大的计算框架. 通过分析转录因子 (TF) 动机,BOM通过分析转录因子 (TF) 动机,准确地预测细胞类型特定的增强剂,优于复杂模型.

更多相关视频

Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
11:36

Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations

Published on: April 21, 2023

2.9K
Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes
07:55

Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes

Published on: May 31, 2011

10.7K

相关实验视频

Last Updated: Jan 10, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
09:07

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation

Published on: June 21, 2016

8.6K
Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations
11:36

Author Spotlight: An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations

Published on: April 21, 2023

2.9K
Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes
07:55

Using SCOPE to Identify Potential Regulatory Motifs in Coregulated Genes

Published on: May 31, 2011

10.7K

科学领域:

  • 基因组学就是基因组学.
  • 计算生物学 计算生物学
  • 分子生物学分子生物学

背景情况:

  • 了解DNA序列如何决定细胞特异性基因调节至关重要.
  • 远端的调节元件控制基因表达,但它们的序列代码很复杂.

研究的目的:

  • 介绍 Bag-of-Motifs (BOM),一种用于预测细胞类型特定增强剂的新型计算框架.
  • 为了证明BOM在各种物种中的准确性和可解释性.

主要方法:

  • 作为转录因子 (TF) 动机的无序计数,表示cis调节元素.
  • 使用梯度增强树来进行预测建模.
  • 通过合成增强剂的实验性构建来验证预测.

主要成果:

  • BOM准确地预测了小鼠,人类,斑马鱼和Arabidopsis中的细胞类型特定增强剂.
  • 在更少参数的预测准确性方面,BOM优于复杂的深度学习模型.
  • 实验验证证证实,预测的动机组驱动细胞类型特定的表达.

结论:

  • BOM提供了一个可扩展和可解释的框架,用于剖析cis-regulatory语法.
  • 在遥远的调节区域内,一个简单的序列代码驱动细胞类型特定的基因活性.
  • 对于跨物种的基因调节研究,BOM具有广泛的适用性.