长期阅读的元基因组学揭示了人类肠道微生物组中的菌体动态
Jakob Wirbel1, Angela S Hickey2, Daniel Chang2
1Division of Hematology, Department of Medicine, Stanford University, Stanford, CA, USA.
Nature
|November 26, 2025
概括
肠道中的菌体 (感染细菌的病毒) 是动态的,一些细菌宿主随着时间的推移而融合和退出. 研究人员发现了新的菌体行为和新一类的移动菌体, 扩大了我们对肠道微生物生态的理解.
科学领域:
- 微生物学
- 基因组学
- 病毒学
背景情况:
- 菌体对于肠道微生物生态和健康至关重要,但仍未得到充分研究.
- 了解菌与细菌的相互作用是解读微生物组动态的关键.
研究的目的:
- 在两年时间内研究人类肠道细菌的益生菌整合动态.
- 描述新型菌体行为及其对细菌基因组可塑性的影响.
主要方法:
- 在两年内对六名健康个体的便样本进行了深度长时间的批量基因组测序.
- 导体整合和切除动态的分析.
- 鉴定和描述新的菌体相互作用.
主要成果:
- 大多数菌被稳定整合,但约5%的细菌宿主显示出动态增益/损失.
- 在样本中观察到具有和没有特定的prophages的细菌宿主.
- 菌体诱导发生在较低水平,同一个菌体集成到不同家族的细菌中,挑战宿主特异性.
- 确定了一种新的IScream菌体,利用细菌转移酶进行调动.
结论:
- 肠道菌体表现出动态的整合和切除,有助于微生物基因组的可塑性.
- 菌与细菌的相互作用比以前想象的要复杂,对水平基因转移有影响.
- 发现IScream菌体揭示了菌-细菌共同进化和自私元素化的新机制.
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