通过对质谱的数据库搜索来识别分子的变体
Mustafa Guler1, Benjamin Krummenacher1, Thomas Hall1
1Carnegie Mellon University, Pittsburgh, PA, USA.
Nature computational science
|December 1, 2025
概括
一个新的算法,频谱-分子对的可变解释 (VInSMoC),增强了从质谱数据的分子识别. 它可以识别已知的分子和新型变体,提高复杂生物样本的准确性.
科学领域:
- 代谢学 代谢学 代谢学
- 计算化学的计算化学
- 生物信息学是一种生物信息学.
背景情况:
- 质谱学对于识别复杂样品中的分子至关重要.
- 现有的数据库搜索工具在扩展性和识别新型分子变异方面扎.
- 目前的方法通常仅限于与已知的化合物完全匹配.
研究的目的:
- 介绍VInSMoC,这是一个用于质谱数据库搜索的新算法.
- 为了能够识别已知的化合物之外的分子变体.
- 为了提高光谱分子匹配的准确性和范围.
主要方法:
- 开发了频谱-分子对的可变解释 (VInSMoC) 算法.
- 实施了对频谱分子匹配的统计显著性估计.
- 与大型光谱 (GNPS) 和分子 (PubChem,COCONUT) 数据库进行基准VInSMoC.
主要成果:
- VInSMoC成功识别了43,000个已知的分子和85,000个以前未报告的分子变体.
- 该算法通过估计统计学意义证明了提高准确性.
- 促进特定化合物的微生物生物合成途径的识别.
结论:
- VInSMoC显著提升了质谱数据库搜索能力.
- 该算法有效地发现了新的分子结构和变体.
- VInSMoC有助于阐明微生物中复杂的生物合成途径.
相关概念视频
Mass Spectrum: Interpretation
2.6K
An unknown compound can be established by identifying the molecular ion peak in the mass spectrum. The molecular ion peak is often weak or absent due to the predominance of fragmentation in high-energy electron beams. In such cases, a soft-energy electron beam can be used to scan the spectrum to enhance the intensity of the molecular ion peak. Additionally, chemical ionization, field ionization, and desorption ionization spectra are used to obtain a relatively intense molecular ion peak.To...
2.6K
High-Resolution Mass Spectrometry (HRMS)
2.3K
The resolution of a mass spectrometer depends on the efficiency of separating ions with different ion masses. The mass of an atom is approximated to the sum of the masses of protons and neutrons inside, considering the masses of protons and neutrons as equal. However, the masses of the proton (1.6726 × 10−24 g) and neutron (1.6749 × 10−24 g) are not truly equal. There is a minor error in the expression of atomic masses relative to the simplest atom of hydrogen. For...
2.3K
Mass Spectrometry: Overview
8.1K
Mass spectrometry is an analytical technique used to determine the molecular mass and molecular formula of a compound. The basic principle of mass spectrometry is to generate ions from the analyte molecule and measure these ion abundances against their molecular mass. One common type of ionization, known as electron ionization or EI, bombards the analyte molecules in the gas phase with high-energy electron beams. The electron beams displace an electron from the molecule and leave behind a...
8.1K
Mass Spectrum
3.9K
A mass spectrum is the graphical representation of the relative abundance of the charged fragments in an analyte plotted against their mass-to-charge ratio (m/z). The plot's x-axis represents the ratio of the mass of the charged fragment to the number of charges it carries. The y axis of the plot represents the relative abundance of each charged species. The relative abundance is calculated from the signal intensity of each charged species recorded at the detector. The most intense signal (the...
3.9K
Tandem Mass Spectrometry
2.3K
Tandem mass spectrometry is a technique that uses multiple mass analyzers in series to obtain a higher selectivity and reduce chemical noise during analyte detection. Instruments with multiple analyzers separated by an interaction cell enable secondary fragmentation and selected study of the fragment ions.Secondary fragmentations occur in the interaction cell and can be induced by various factors. Fragmentation induced by collision with inert gases, such as N2, Ar, He, etc., is called...
2.3K
Peptide Identification Using Tandem Mass Spectrometry
8.1K
Tandem mass spectrometry, also known as MS/MS or MS2, is an analytical technique that employs two mass analyzers. Essentially it is a series of mass spectrometers that helps isolate a particular biomolecule and then helps study its chemical properties.
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
This technique helps gather information regarding the protein from which the peptide was obtained and to study the peptides’ amino acid sequence. Identifying peptides from a complex mixture is an important component of the growing field of...
8.1K


