格拉梅内2025:扩大了比较基因组学和途径资源,集成搜索,以及作物研究的泛基因组门户
Andrew Olson1, Sunita Kumari1, Xuehong Wei1
1Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, United States.
Nucleic acids research
|December 3, 2025
概括
草基因植物是植物基因组学的综合数据库,现在有作物特定的泛基因组门户和标准化的遗传变异. 这增强了数据共享和植物基因组多样性和功能的探索.
科学领域:
- 植物基因组学 植物基因组学
- 生物信息学是一种生物信息学.
- 进行比较的基因组学.
背景情况:
- 格拉是植物基因组学和途径分析的关键资源.
- 之前的版本整合了功能注释,策划的路径和多omics数据.
- 需要标准化数据和改善植物研究的可访问性至关重要.
研究的目的:
- 报告Gramene数据库的更新和新功能,重点关注增强的比较基因组学和数据可访问性.
- 为关键农业物种引入特定作物泛基因组门户.
- 改进数据集成,标准化和面向用户的功能.
主要方法:
- 整合人口规模数据集和多重组装基因组.
- 采用对遗传变异的标准化 rsID,以确保 FAIR 数据原则.
- 通过嵌入式表达式查看器和生殖质链接来增强搜索功能.
主要成果:
- 增加了玉米,,大米和葡萄藤的泛基因组门户.
- 发布69包括233个参考基因组,139个物种的途径,以及广泛的表达和变异数据.
- 新的功能有助于将遗传变异与生殖质和种子库联系起来.
结论:
- 格拉门植物被强化为探索植物基因组多样性和基因功能的综合平台.
- 标准化数据和新的门户网站提高了互操作性和FAIR数据原则.
- 该数据库支持跨多种植物物种的进化保护研究.
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