罕见的代谢基因基本性是Escherichia coli中微型适应的一个决定因素
Omid Ardalani1, Patrick V Phaneuf1, Jayanth Krishnan2
1Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark.
PLoS pathogens
|December 8, 2025
概括
细菌中的罕见代谢基因对于在核心基因丢失时维持代谢功能至关重要. 这些基因对生存和适应特定环境至关重要,挑战了以前的假设.
科学领域:
- 微生物基因组学 微生物基因组学
- 代谢工程是代谢工程.
- 进化生物学是进化的生物学.
背景情况:
- 细菌泛基体中的罕见基因在历史上被视为非必要的或进化副产品而被驳回.
- 它们在新陈代谢强度中的作用,特别是在核心基因损失下,仍然在很大程度上未被探索.
研究的目的:
- 系统地调查大肠杆菌中罕见代谢基因的基本性和功能.
- 确定稀有基因是否有助于在不同宿主环境中的代谢弹性和适应性.
主要方法:
- 对大肠杆菌的15311个菌株特定基因组规模模型 (panGEM) 的重建.
- 进行了超过2240万个基因淘汰模拟,以评估基因基本性.
主要成果:
- 9.4%的罕见代谢基因在至少一个宿主环境 (便,血清,尿液) 中被发现是必不可少的.
- 41%的菌株需要至少一种罕见的必需代谢基因才能生存.
- 罕见的代谢基因与微型适应有关.
- panGEM确定了保存的代谢反应作为潜在的药物标.
结论:
- 罕见的代谢基因在细菌的代谢弹性中起着至关重要的作用,这与以前的观点相反.
- 这些基因对于在特定的环境压力和核心基因损失下生存至关重要.
- 这项研究强调了罕见基因在微生物适应中的重要性,并表明它们作为治疗点的潜力.
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