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相关概念视频

Proteomics01:33

Proteomics

9.2K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
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Subcellular Fractionation01:32

Subcellular Fractionation

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The homogenate obtained after cell lysis contains various membrane-bound organelles that can be further separated into pure fractions by subcellular fractionation. These isolates are used to study specific cellular components, analyze localized protein activity, and are even employed in diagnostics. Fractionation is typically achieved using centrifugation methods, the most common being density-gradient and differential centrifugation.
Differential Centrifugation
Differential centrifugation is...
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Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

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Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
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Distribution of Cytoplasmic Content02:33

Distribution of Cytoplasmic Content

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Cytokinesis segregates a cell’s chromosomes and organelles into its daughter cells. Organelles divide and grow prior to cell division but cannot be synthesized de novo; therefore, cells must receive at least one copy of each organelle to survive. Currently, many of the details of how the organelles are distributed are not yet fully elucidated.
Distribution of cytoplasmic determinants
The cytoplasm contains various organelles, as well as salts, proteins, and water. The distribution of...
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Eukaryotic Compartmentalizations01:46

Eukaryotic Compartmentalizations

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One of the distinguishing features of eukaryotic cells is that they contain membrane-bound organelles, such as the nucleus and mitochondria, that carry out specialized functions. Since biological membranes are only selectively permeable to solutes, they help create a compartment with controlled conditions inside an organelle. These microenvironments are tailored to the organelle's specific functions and help isolate them from the surrounding cytosol.
For example, lysosomes in the animal cells...
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Eukaryotic Compartmentalization01:37

Eukaryotic Compartmentalization

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One of the distinguishing features of eukaryotic cells is that they contain membrane-bound organelles, such as the nucleus and mitochondria, that carry out specialized functions. Since biological membranes are only selectively permeable to solutes, they help create a compartment with controlled conditions inside an organelle. These microenvironments are tailored to the organelle's specific functions and help isolate them from the surrounding cytosol.
For example, lysosomes in the animal...
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相关实验视频

Updated: Jan 9, 2026

The CryoAPEX Method for Electron Microscopy Analysis of Membrane Protein Localization Within Ultrastructurally-Preserved Cells
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The CryoAPEX Method for Electron Microscopy Analysis of Membrane Protein Localization Within Ultrastructurally-Preserved Cells

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APEX2和TurboID定义了独特的亚细胞蛋白质.

Alexandria S Battison1, Jeremy L Balsbaugh2, Jeremy C Borniger3

  • 1Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA.

Scientific reports
|December 10, 2025
PubMed
概括

选择正确的近距离标记酶对于准确的蛋白质组映射至关重要. 对于不同的细胞蛋白质组学研究,TurboID和APEX2提供了明显的优势.

关键词:
亚博体育APEX 亚博体育APEX 亚博体育APEX是什么细胞分区是细胞的分区.蛋白质组学是指蛋白质组学.靠近标签的标签.这是一个TurboIDID.

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Mitochondria and Endoplasmic Reticulum Imaging by Correlative Light and Volume Electron Microscopy
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Mitochondria and Endoplasmic Reticulum Imaging by Correlative Light and Volume Electron Microscopy

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Enriching Subcellular Proteins in Leptospira Using a Triton X-114-Based Fractionation Approach
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相关实验视频

Last Updated: Jan 9, 2026

The CryoAPEX Method for Electron Microscopy Analysis of Membrane Protein Localization Within Ultrastructurally-Preserved Cells
11:45

The CryoAPEX Method for Electron Microscopy Analysis of Membrane Protein Localization Within Ultrastructurally-Preserved Cells

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Mitochondria and Endoplasmic Reticulum Imaging by Correlative Light and Volume Electron Microscopy

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Enriching Subcellular Proteins in Leptospira Using a Triton X-114-Based Fractionation Approach
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科学领域:

  • 蛋白质组学是指蛋白质组学.
  • 细胞生物学 细胞生物学
  • 生物化学 生物化学

背景情况:

  • 接近标签是绘制局部蛋白质组的关键技术.
  • 基于过氧化酶 (APEX) 和基于生物基酶 (BioID) 的试剂是常见的.
  • 酶选择可以引入蛋白质组偏差.

研究的目的:

  • 为了比较近距离标记酶TurboID和APEX2.
  • 为了分析HEK293细胞中分区特定的蛋白质组丰富.
  • 为了评估酶特异性偏差和蛋白酶消化效应.

主要方法:

  • 在HEK293单元中使用TurboID和APEX2进行近距离标记.
  • 分区隔离 (细胞质,细胞核,膜).
  • 基于质谱的蛋白质组分析与素和GluC消化.

主要成果:

  • 无论是TurboID还是APEX2,都丰富了分区特定的蛋白质组.
  • TurboID发现了更多的膜蛋白和RNA处理蛋白.
  • APEX2丰富了代谢途径蛋白质;蛋白酶选择影响偏差.

结论:

  • TurboID适用于广泛的蛋白质组研究,APEX2适用于特定的途径.
  • 酶和蛋白酶的选择对近距离标签结果产生了重大影响.
  • 战略选择可以提高细胞蛋白质组绘图的准确性.