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相关概念视频

Genetic Screens02:46

Genetic Screens

5.5K
Genetic screens are tools used to identify genes and mutations responsible for phenotypes of interest. Genetic screens help identify individuals or a group of people at risk of developing  genetic diseases and help them with early intervention, targeted therapy, and reproductive options.
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...
5.5K
Epistasis Analysis01:09

Epistasis Analysis

5.6K
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
5.6K
DNA Microarrays02:34

DNA Microarrays

20.6K
Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in genome-wide studies to compare gene or protein expression under two varied conditions, such as healthy and diseased states. Microarrays consist of glass or silica slides on which probe molecules are covalently attached through surface functionalization. Most commonly, the slides are prepared through the chemisorption of silanes to silica...
20.6K
Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

15.2K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
15.2K
Ribosome Profiling02:24

Ribosome Profiling

4.0K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.0K
Reporter Genes02:11

Reporter Genes

12.8K
Reporter genes are a type of protein-coding gene that are often tagged to a gene of interest. Once inside a target cell, reporter genes usually produce visually identifiable characteristics like fluorescence and luminescence when expressed along with the gene of interest. Thus, reporter genes “report” the presence or absence of genes of interest in an organism, determine the gene expression pattern, or track the physical location of a DNA segment or protein in the cell.
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相关实验视频

Updated: Jan 8, 2026

An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
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An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations

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利用基因表达的波动来检测基因之间的因果相互作用.

Euan Joly-Smith1,2, Mir Mikdad Talpur1, Paige Allard3

  • 1Department of Physics, University of Toronto, Toronto, Canada.

eLife
|December 16, 2025
PubMed
概括

这项研究引入了一种新的方法,通过分析自然细胞对细胞的变异性来识别基因相互作用,避免细胞干扰. 这种方法使用数学关系来解释基因表达噪声,从而能够检测因果相互作用.

关键词:
美国大肠杆菌 (E. coli).因果关系影响因果关系影响.计算生物学是计算生物学.基因调节 基因调节 基因调节网络推断 网络推断生物系统的物理生活系统的物理.随机波动是指随机波动的波动.系统生物学 系统生物学

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Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress

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High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions
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相关实验视频

Last Updated: Jan 8, 2026

An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations
10:17

An Allele-specific Gene Expression Assay to Test the Functional Basis of Genetic Associations

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Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress
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Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress

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科学领域:

  • 系统生物学 系统生物学
  • 分子生物学分子生物学
  • 遗传学 是一个遗传学.

背景情况:

  • 了解细胞行为需要破译细胞组件内的因果相互作用.
  • 目前的方法往往需要扰乱细胞状态,限制机械洞察力.

研究的目的:

  • 开发一种检测因果基因相互作用的方法,而不会改变细胞生理.
  • 为了利用自然发生的细胞间变异性来推断基因调节网络.

主要方法:

  • 使用数学关系来限制基因表达噪声在生物化学网络中的传播.
  • 分析基因相同细胞的静态种群快照.
  • 开发一种基因表达的被动记者,类似于双记者分析.

主要成果:

  • 从基因表达波动中推断因果相互作用的理论框架.
  • 在合成基因调节电路中提供了实验性的原则证明.
  • 证实了该方法在受控环境中检测因果相互作用的能力.

结论:

  • 提出的方法提供了一个非扰动性策略来识别基因相互作用.
  • 需要进一步的研究来验证在自然网络和各种生物体中大规模的适用性.