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相关概念视频

Genomics02:02

Genomics

Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
Gene Duplication and Divergence02:37

Gene Duplication and Divergence

The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are characterized.
Genetic Screens02:46

Genetic Screens

Genetic screens are tools used to identify genes and mutations responsible for phenotypes of interest. Genetic screens help identify individuals or a group of people at risk of developing  genetic diseases and help them with early intervention, targeted therapy, and reproductive options.
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which result in visible changes...
Synthetic Biology02:55

Synthetic Biology

Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
Cell Specific Gene Expression01:58

Cell Specific Gene Expression

Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...

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相关实验视频

Updated: Jun 13, 2026

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
09:14

DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments

Published on: January 27, 2016

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通过单细胞多表观基因组数据集成框架重建表观基因组动态.

Takeru Fujii1, Kosuke Tomimatsu1, Michiko Kato1

  • 1Division of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.

Nature communications
|December 17, 2025
PubMed
概括
此摘要是机器生成的。

这项研究引入了一种新的单细胞框架,用于确定基因激活期间染色质因子的结合顺序. 它揭示了表观基因调节者的时间协调,进步了我们对基因调节的理解.

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Reusable Single Cell for Iterative Epigenomic Analyses
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DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments
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科学领域:

  • 分子生物学分子生物学
  • 基因组学就是基因组学.
  • 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.

背景情况:

  • 转录调节涉及对DNA的调节因素的复杂相互作用.
  • 在转录激活期间表观基因调节器积累的精确顺序在很大程度上是未知的.

研究的目的:

  • 开发一个单细胞数据集成框架,用于推断染色素因子的结合顺序.
  • 系统地链接转录因子结合的组合模式,基因组修饰和染色质重塑.

主要方法:

  • 开发了一种可扩展的单细胞方法,sci-mtChIL-seq,以描述RNA聚合酶II (RNAPII) 和表观基因组调节者的全基因组结合.
  • 集成了多个sci-mtChIL-seq数据集,通过RNAPII占用来定义转录状态.

主要成果:

  • 在单细胞分辨率下推断了多重染色因子的结合顺序.
  • 在转录激活过程中揭示了各种染色质因子之间的时间协调.
  • 转录因子结合,基因组修饰和染色质重塑的相关组合模式.

结论:

  • 开发的框架提供了一种强有力的方法来揭示依赖上下文的表观基因组动态.
  • 这种方法促进了对复杂细胞系统中基因调节原理的理解.