在传染性和非传染性疾病中的微生物组分析范式
Ingo B Autenrieth1, Laetitia Bury2, Ashley M Rooney3
1Department of Digital and Molecular Microbiology, University Hospital Heidelberg, University of Heidelberg, Heidelberg, Germany; Faculty of Medicine, University of Tuebingen, Tuebingen, Germany.
下一代测序推进了人类肠道微生物组研究,揭示了其在健康和疾病中的作用. 标准化的深度元基因组测序和索引得分对于诊断异位生物病和开发个性化微生物组疗法至关重要.
科学领域:
- 微生物学 微生物学
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
背景情况:
- 下一代测序和生物信息学已经使人类肠道微生物组的详细分析成为可能.
- 人们越来越认识到肠道微生物群在健康,传染病和非传染性疾病中的作用.
- 目前的理解挑战了关于微生物群的直接因果影响的先前假设.
研究的目的:
- 突出微生物组诊断和治疗的临床意义.
- 倡导标准化,验证的深度元基因组测序方法.
- 为了实现菌株级微生物组分析和个体微生物组的分类.
主要方法:
- 实施深度元基因组测序.
- 使用标准化和验证的实验室程序.
- 开发用于将微生物群分类为异生菌或益生菌的索引分数.
主要成果:
- 在菌株级别解读人类肠道微生物组.
- 确定将微生物组归类为与疾病 (异生物) 或健康 (益生物) 相关的标准.
结论:
- 超基因组洞察力是推动微生物组诊断的关键.
- 标准化的测序和分类对于临床应用至关重要.
- 基于元基因组的疗法,包括活生物疗法产品和便微生物群转移,对个性化医疗有希望.
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