qMol:使用基于碎片的缩小图表进行高效的分子查询的Web服务器
Weiyu Zhou1,2, Dongliang Ke1,2, Zhihan Zhang1,2
1State Key Laboratory of Petroleum Molecular and Process Engineering, Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, 200062, China.
Journal of chemical information and modeling
|December 19, 2025
概括
我们开发了qMol,这是一个新的在线平台,用于使用基于碎片的缩小图形表示来搜索可访问的分子. 该工具通过允许灵活搜索以识别和模拟探索来帮助药物发现.
科学领域:
- 计算化学计算化学
- 药用化学 医学化学
- 生物信息学是一种生物信息学.
背景情况:
- 加快领先的识别在药物发现中至关重要.
- 现有的分子数据库搜索工具的灵活性可能受到限制.
- 基于碎片的方法为分子表示提供了一个有希望的途径.
研究的目的:
- 介绍 qMol,这是一个在线平台,用于搜索可访问的分子.
- 允许灵活的分子搜索,使用基于片段的缩小图表表示.
- 通过对分子拓和特征的精确控制,支持药物发现中的模拟识别.
主要方法:
- 分子以化学意义的缩小图表表示.
- 碎片作为节点,它们的连接作为图形表示的边缘.
- qMol平台允许用户获取精确或多样化的缩小图形.
主要成果:
- qMol可以精确地控制全球拓和当地化学特征.
- 用户可以在有针对性的搜索中应用片段级限制.
- 该平台有助于有效地探索化学数据库.
结论:
- qMol对于医学研究人员来说是一个宝贵的资源.
- 基于片段的缩小图形表示增强了分子搜索能力.
- 在药物发现中,qMol支持高效的标识和模拟探索.
相关概念视频
Molecular Models
43.4K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
43.4K
Ligand Binding Sites
14.8K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
14.8K
Ligand Binding Sites
8.5K
8.5K


