通过混合图形神经网络对p53抑制剂药物向相互作用进行AI驱动的IC50预测
Walaa H El-Masry1,2, Samar Monem3,4, Nagy Ramadan Darwish5
1Information Systems and Technology Department, Faculty of Graduate Studies for Statistical Research, Cairo University, Giza, Egypt. w.elmasry@fci-cu.edu.eg.
Journal of computer-aided molecular design
|December 24, 2025
概括
一个新的混合药物向相互作用IC50 (HDTI-IC50) 模型使用图形卷积网络和图形注意网络来预测p53抑制剂的疗效. 这种人工智能驱动的方法通过准确预测针对p53蛋白的IC50值来增强药物发现.
科学领域:
- 计算药物发现和开发.
- 生物信息学和医学中的人工智能.
- 瘤学和癌症治疗研究.
背景情况:
- 数字化转型和人工智能正在彻底改变医疗保健和制药研究.
- 对于抑制瘤至关重要的p53蛋白质是一个具有挑战性的但至关重要的治疗标.
- 现有的药物向相互作用预测模型往往缺乏特异性或忽视结构拓.
研究的目的:
- 提出一种新的混合药物向相互作用IC50 (HDTI-IC50) 预测模型.
- 为了具体预测p53抑制剂的IC50值,这是一个历史上难以实现的目标.
- 利用先进的AI技术,提高药物发现的准确性和效率.
主要方法:
- 集成图形卷积网络 (GCNs) 进行局部结构信息和图形注意网络 (GATs) 进行长距离依赖.
- 顺序堆叠GCN和GAT层,以学习可适应多种图形结构的丰富节点表示.
- 使用全球聚合机制 (GMP和GAP) 和基于图形的分子表示.
主要成果:
- HDTI-IC50模型以0.1的平均绝对误差 (MAE),0.19的根平均平方误差 (RMSE) 和0.8.2的R平方 (R2) 实现了卓越的性能.
- 与单个GCN,基于GAT的模型和其他相关的药物标模型相比,证明了更好的预测准确性和能力.
- 实现了 7.70 秒的有效平均推断时间,表明计算经济性.
结论:
- 拟议的HDTI-IC50模型为预测p53抑制剂IC50值提供了一个统一而有效的框架.
- 混合GCN-GAT架构成功地捕获了本地和全球分子关系,以改善预测.
- 这种由人工智能驱动的方法显示出有显著前景,可以促进发现针对p53蛋白的新疗法.
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