TAD边界架构和基因活动是不结合的
Faisal Almansour1, Nadezda A Fursova2, Adib Keikhosravi3
1Cell Biology of Genomes Group, National Cancer Institute, NIH, Bethesda MD 20892, USA.
bioRxiv : the preprint server for biology
|December 25, 2025
概括
拓关联域 (TAD) 是基因组的关键结构. 我们的研究表明,TAD边界架构与基因活动不结合,这挑战了它们在基因调节中的作用.
科学领域:
- 基因组学就是基因组学.
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 分子生物学分子生物学
背景情况:
- 拓关联域 (TADs) 是基因组组织的基本单元.
- 提议TADs的一个功能是通过控制色素相互作用来调节基因表达.
研究的目的:
- 研究TAD边界架构与基因活动之间的关系.
- 为了确定TAD是否在单细胞水平上在基因调节中发挥直接作用.
主要方法:
- 高通量成像用于同时评估TAD边界架构和基因活性.
- 单细胞和单基因基因分析.
- 削弱CTCF蛋白质以破坏TAD边界.
主要成果:
- 与非边界区域相比,TAD边界表现出更频繁的配对,但这些相互作用并不频繁.
- 接近TAD边界与TADs内的转录活动无关.
- 通过CTCF枯竭破坏TAD边界不会影响TAD内的基因表达.
结论:
- TAD边界架构和基因活动似乎在很大程度上没有结合.
- 通过边界相互作用直接调节基因表达的TADs的拟议模型需要重新评估.
相关概念视频
Chromatin Position Affects Gene Expression
24.6K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
24.6K
Regulation of Expression Occurs at Multiple Steps
25.6K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
25.6K
Regulation of Expression Occurs at Multiple Steps
3.8K
3.8K
Epigenetic Regulation
3.7K
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...
3.7K
Epigenetic Regulation
33.4K
Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
33.4K
Regulation of Expression at Multiple Steps
1.3K
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
1.3K


