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相关概念视频

Cooperative Allosteric Transitions01:58

Cooperative Allosteric Transitions

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Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
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Allosteric Regulation01:08

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Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
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Ligand Binding and Linkage00:49

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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Spatiotemporal Control of Protein Activity through Optogenetic Allosteric Regulation
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循环调节一个结结的蛋白质中的远程体通信.

Sanjib Thakuria1, Sandip Paul1

  • 1Department of Chemistry, Indian Institute of Technology, Guwahati, Assam 781039, India.

The journal of physical chemistry. B
|December 26, 2025
PubMed
概括

蛋白结,就像AOTCase中的三叶草结一样,可以调节通信通路. 一个关键残留物的突变破坏了这些全网络,揭示了结节.

科学领域:

  • 生物化学和分子生物学
  • 结构生物学 结构生物学
  • 计算生物学 计算生物学

背景情况:

  • 蛋白结是具有不清楚生物作用的拓结构,可能会影响稳定性,催化或动态.
  • N-乙-l-甲基因转碳胺酶 (AOTCase) 含有三叶草结,具有特定的循环和残留物 (N183),涉及到全调节.

研究的目的:

  • 调查三叶草结在AOTCase中的作用,特别是结结环和N183残留物,在中介到活性部位的远程全沟通方面.
  • 了解突变如何影响全网络和蛋白质动态.

主要方法:

  • 经典的分子动力学模拟.
  • 基于网络的相关性分析.
  • 突变发生的研究 (N183A).
  • 自由能量表面的计算.
  • 主要组件分析.主要组件分析.
  • 基于接触的分析.

主要成果:

  • 联体结合状态通过结结环呈现冗余的通信路径,在apo状态中缺少这些通讯路径.
  • 突变N183A破坏了全网络,缩短了通道,并将通信枢纽从结结的循环中移开.
  • 突变的蛋白质显示出增加的形状限制,以及更紧张的结结环和线程间隙.

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结论:

  • 在AOTCase中结结的循环不仅提供了结构屏蔽,而且还积极调节全网络.
  • 其余N183作为一个可调节节点,控制这些全性通路.
  • 这项研究阐明了蛋白结在生物调节中的功能意义.