牛的低覆盖全基因组测序 (lcWGS):应用潜力和前景的分析
Olga Kostyunina1, Nikita Koldichev1, Gleb Nemkovskiy1,2
1LLC «WESTTRADE Ltd.», 115201 Moscow, Russia.
Animals : an open access journal from MDPI
|December 30, 2025
概括
低覆盖全基因组测序 (lcWGS) 为牛遗传研究提供了一种具有成本效益的方法,可实现精确的基因型归因和变异检测. 结构变异分析需要进一步改进,以充分利用其在牛基因组学方面的潜力.
科学领域:
- 动物基因组学 动物基因组学
- 生物信息学是一种生物信息学.
- 人口遗传学 人口遗传学
背景情况:
- 全基因组研究对于了解牛群的遗传变异性至关重要.
- 为了成本效益,传统方法正在被低覆盖全基因组测序 (lcWGS) 补充.
- lcWGS与归算相结合,可以高精度和密度重建基因型.
研究的目的:
- 审查cWGS在牛中的潜力和前景,用于基因组选择和遗传研究.
- 分析目前的进展,归算准确性,影响因素和牛lcWGS的软件效率.
- 确定在牛基因组学中应用 lcWGS 的挑战和局限性.
主要方法:
- 在PubMed和谷歌学者数据库的文献调查.
- 专注于原创研究,系统审查和大规模项目.
- 对归算准确度,参考面板特征,成本效益和实际应用的分析.
主要成果:
- lcWGS是一种成本效益高的替代传统全基因组方法.
- 影响lcWGS效率的关键因素包括测序深度,参考面板和归算算法.
- lcWGS有效捕获罕见和特定品种的变异,但在结构变异归算方面面临挑战.
结论:
- lcWGS显示了牛基因组学的巨大潜力,为遗传研究和育种提供了强大的工具.
- 对于结构变异分析,需要改进方法,并与先进资源进行整合.
- 解决目前的局限性将提高lcWGS的实用性,以加速牛的遗传进步.
相关概念视频
Genomics
39.5K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
39.5K
Modern Molecular Taxonomy
541
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
541
Next-generation Sequencing
97.6K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
97.6K
Evolutionary Relationships through Genome Comparisons
6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K
RNA-seq
11.7K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases.
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
11.7K
Ribosome Profiling
4.0K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.0K


