Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Karyotyping01:17

Karyotyping

68.0K
Overview
68.0K
Comparing Copy Number Variations and SNPs02:26

Comparing Copy Number Variations and SNPs

18.5K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
18.5K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

6.8K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
6.8K
Genome Copying Errors02:46

Genome Copying Errors

5.0K
DNA replication is a well-evolved process that copies millions of base pairs with high fidelity during each cell division. Occasionally a wrong base or a long stretch of wrong bases may get added to the daughter strands. If the errors are left unchecked, cells might accumulate several mutations that might endanger their  survival. Therefore, the copying errors are checked and repaired at three levels.
5.0K
Multi-species Conserved Sequences02:51

Multi-species Conserved Sequences

4.6K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale  studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
4.6K
Genome Size and the Evolution of New Genes03:21

Genome Size and the Evolution of New Genes

3.2K
3.2K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Genomic dissection of hoof and leg conformation in Swiss dairy cattle populations reveals polygenic architecture and a recessive HYAL1 nonsense variant affecting longevity in Holstein cattle.

Genetics, selection, evolution : GSE·2026
Same author

Genetically diverse populations hold the keys to climatic adaptation in the Western barn owl (Tyto alba).

Communications biology·2026
Same author

Inbreeding depression in morphological and growth traits of wild barn owls (Tyto alba).

Proceedings. Biological sciences·2026
Same author

Benchmarking imputation accuracy in the presence or absence of a reference panel.

Molecular biology and evolution·2026
Same author

Across-breed analyses of genome-wide association studies for stature and mammary gland morphology in cattle reveal pleiotropic effects of the Friesian POLLED haplotype.

Genetics, selection, evolution : GSE·2026
Same author

Immune responses of Bos indicus versus Bos taurus cattle towards Bluetongue virus or Schmallenberg virus differ significantly.

Communications biology·2026

相关实验视频

Updated: Jan 7, 2026

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells
14:26

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells

Published on: April 4, 2016

25.8K

PG-SCUnK:使用单复制和通用K-mers测量泛基因组图的代表性.

Tristan Cumer1, Sotiria Milia2, Alexander S Leonard2

  • 1Animal Genomics, ETH Zurich, Zurich, Switzerland. t.cumer.sci@gmail.com.

BMC bioinformatics
|December 31, 2025
PubMed
概括

我们开发了PG-SCUnK以通过分析k-mer表示来评估泛号图的质量. 这种方法有助于优化图形构造,以更好地表示遗传多样性和短读映射.

关键词:
图表质量评估 图表质量评估图表的代表性 图表的代表性潘格诺姆图表中的图形.一个副本的k-mers.全面的 k-mers 是一个普遍的 k-mers.

更多相关视频

Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants
09:16

Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants

Published on: February 21, 2015

20.3K
Detection of Copy Number Alterations Using Single Cell Sequencing
09:45

Detection of Copy Number Alterations Using Single Cell Sequencing

Published on: February 17, 2017

12.1K

相关实验视频

Last Updated: Jan 7, 2026

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells
14:26

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells

Published on: April 4, 2016

25.8K
Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants
09:16

Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants

Published on: February 21, 2015

20.3K
Detection of Copy Number Alterations Using Single Cell Sequencing
09:45

Detection of Copy Number Alterations Using Single Cell Sequencing

Published on: February 17, 2017

12.1K

科学领域:

  • 基因组学就是基因组学.
  • 生物信息学是一种生物信息学.

背景情况:

  • 泛基因组图集多个组合,用于非冗余的遗传多样性表示.
  • 目前的评估使用技术参数,而不是评估同类拉伸表示或读取对齐效率.

研究的目的:

  • 引入一种新的定量方法来评估集成组件的泛基组图表表示.
  • 为了评估同源基因区域的捕获程度以及短读图到泛基因组图的读取程度.

主要方法:

  • 开发了一种方法来量化庞基因组图节点内的单复制和通用k-mers的独特和完整表示.
  • 在开源工具PG-SCUnK中实现了该方法.
  • 分析了唯一的,重复的和分割的k-mers的分数.

主要成果:

  • 该方法量化了在泛基组图中k-mer的表示.
  • 唯一,重复和分割k-mers的部分与短读取映射率相关.
  • PG-SCUnK提供了对图形质量的洞察.

结论:

  • PG-SCUnK 方便选择最佳参数来构建参考泛基因组图.
  • 该工具有助于改进泛基因组图的构造,以便更好地进行基因组分析.