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相关概念视频

RNA Structure01:23

RNA Structure

78.7K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
78.7K
RNA Structure01:19

RNA Structure

7.1K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
7.1K
RNA-seq03:21

RNA-seq

11.7K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
11.7K
Ribosome Profiling02:24

Ribosome Profiling

4.1K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.1K
Nucleic Acid Structure01:25

Nucleic Acid Structure

8.4K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
8.4K
RNA Stability01:53

RNA Stability

35.6K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
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相关实验视频

Updated: Jan 13, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

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解码RNA结构组合:能源景观探索TAR干环的探索

Konstantin Röder1

  • 1Randall Centre for Cell and Molecular Biophysics, King's College London, London WC2R 2LS, United Kingdom.

Journal of chemical theory and computation
|January 6, 2026
PubMed
概括
此摘要是机器生成的。

离散路径采样有效地绘制复杂的RNA结构组合和激活路径,帮助治疗开发. 这种计算方法在没有实验数据的情况下捕获突变效应,揭示了短暂的结合口袋.

更多相关视频

Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen
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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen

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RNA Secondary Structure Prediction Using High-throughput SHAPE
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RNA Secondary Structure Prediction Using High-throughput SHAPE

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相关实验视频

Last Updated: Jan 13, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen
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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen

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RNA Secondary Structure Prediction Using High-throughput SHAPE
13:42

RNA Secondary Structure Prediction Using High-throughput SHAPE

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科学领域:

  • 分子生物学分子生物学
  • 计算生物学 计算生物学
  • 生物物理学的生物物理.

背景情况:

  • 由于动态多态性,RNA结构合集的研究具有挑战性.
  • 目前的计算和实验方法在完全描述RNA动态方面存在局限性.
  • 为了准确的建模,RNA力场需要进一步开发.

研究的目的:

  • 为了证明用于全面RNA结构组合映射的离散路径采样.
  • 验证该方法捕获突变效应的能力.
  • 揭示RNA激活途径的复杂性,并确定新的结合点.

主要方法:

  • 使用离散路径采样进行能源景观探索.
  • 对RNA结构组合的计算建模 (TAR干循环和ES2).
  • 对实验观察的验证,不包括外部数据.

主要成果:

  • 离散路径采样成功地映射出复杂的RNA结构组合.
  • 该方法准确地复制了TAR干循环和ES2的实验结果.
  • 结构组合和激活途径中显著的复杂性被揭示出来.
  • 在激活途径中出现的暂时结合口袋被确定.

结论:

  • 离散路径采样是阐明RNA结构组合和动态的强大工具.
  • 该方法为RNA功能提供了洞察力,并可以指导治疗干预.
  • 精确的RNA计算建模是可以通过先进的采样技术实现的.