托波异相酶调节酵母中的替代转录起点选择
Eleanor Elgood Hunt1, Claudia Vivori1, Waleed S Albihlal1
1The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, United Kingdom.
G3 (Bethesda, Md.)
|January 6, 2026
概括
在酵母中,DNA超级卷影响了替代转录开始地点 (TSS) 的使用. 削减拓酶酶会改变TSS选择,影响基因调节和蛋白质表达.
科学领域:
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
- 生物化学 生物化学
背景情况:
- 大多数基因利用多个转录起点 (TSSs),称为替代TSSs.
- 替代性TSS选择是一种受管制的过程,影响基因表达和蛋白质多样性.
- DNA超级卷影响转录,但其在替代TSS使用中的作用尚不清楚.
研究的目的:
- 调查DNA超级卷对替代TSS使用的调节效应.
- 确定拓酶枯竭如何影响Saccharomyces cerevisiae中的替代TSS选择.
主要方法:
- 在酵母中早期半转化过程中,拓酶酶 (Top1和Top2) 的耗尽.
- 应用一个改进的TSS测序协议来分析TSS使用情况.
- 相关分析将DNA超级卷与TSS选择联系起来.
主要成果:
- 在近600个基因中,DNA超级卷影响了TSS的替代性使用.
- 拓酶枯竭导致了更多的替代和异常TSS使用,特别是在开放的读取框架附近和内部.
- 具有广泛间隔的替代性TSS的基因受到Top1/Top2共耗尽的影响最大.
结论:
- 在正确选择转录起始点方面,DNA超级卷起着至关重要的作用.
- 来自替代 TSS 的转录诱导的超级卷可以导致异常的 TSS 使用.
- 在转录过程中保持适当的替代TSS选择,拓聚酶是必不可少的.
相关概念视频
Eukaryotic Transcription Inhibitors
10.9K
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
10.9K
Conservative Site-specific Recombination and Phase Variation
6.6K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
6.6K
RNA Polymerase II Accessory Proteins
10.7K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
10.7K
Chromatin Structure Regulates pre-mRNA Processing
8.1K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
8.1K
Alternative RNA Splicing
24.6K
Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
24.6K
Alternative RNA Splicing
4.8K
4.8K


